Variant report

Variant	rs2390780
Chromosome Location	chr4:125982027-125982028
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10518457	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11732137	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13106212	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2390776	0.80[EUR][1000 genomes]
rs4476612	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4616765	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4834015	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6858704	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7694289	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv968053	chr4:125979924-125995803	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125980400-125983000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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