Variant report

Variant	rs2391174
Chromosome Location	chr7:25979338-25979339
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12154905	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12532580	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs12538563	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs12672505	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs28612846	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4389834	0.91[EUR][1000 genomes]
rs4722549	0.84[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs6951827	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7786102	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7806251	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25976600-25979800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:25978800-25979800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr7:25979000-25980800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:25979200-25979400	Enhancers	Dnd41	blood
5	chr7:25979200-25979600	Enhancers	K562	blood
6	chr7:25979200-25979800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr7:25979200-25979800	Enhancers	NHEK	skin
8	chr7:25979200-25980000	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr7:25979200-25980200	Enhancers	Colonic Mucosa	Colon
10	chr7:25979200-25980400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr7:25979200-25981400	Enhancers	Fetal Thymus	thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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