Variant report

Variant	rs2391492
Chromosome Location	chr7:28027175-28027176
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11761628	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs34079332	0.81[AMR][1000 genomes]
rs34714526	0.81[AMR][1000 genomes]
rs36199538	0.81[AFR][1000 genomes]
rs38509	0.83[ASN][1000 genomes]
rs3857729	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6956423	0.89[ASN][1000 genomes]
rs7384844	0.81[AMR][1000 genomes]
rs763896	0.81[AMR][1000 genomes]
rs9648343	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1030685	chr7:27844038-28177301	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:28002800-28034600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr7:28006400-28031800	Weak transcription	NHDF-Ad	bronchial
3	chr7:28012400-28028000	Weak transcription	Primary B cells from peripheral blood	blood
4	chr7:28013400-28034200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr7:28015600-28032400	Weak transcription	Ovary	ovary
6	chr7:28017600-28042400	Weak transcription	Aorta	Aorta
7	chr7:28017800-28028000	Weak transcription	Fetal Muscle Leg	muscle
8	chr7:28020000-28032400	Weak transcription	Primary B cells from cord blood	blood
9	chr7:28022400-28028000	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr7:28022400-28031000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr7:28022400-28036200	Weak transcription	Lung	lung
12	chr7:28026200-28027200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
13	chr7:28026200-28027200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr7:28026400-28027200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr7:28026400-28032200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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