Variant report

Variant	rs2394665
Chromosome Location	chr6:29703140-29703141
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:29702012..29703555-chr6:29719487..29721197,2	K562	blood:
2	chr6:29702235..29703896-chr6:29705917..29708900,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZFP57-7	chr6:29702805-29704597	ENSG00000214922.3

Variant related genes	Relation type
ENSG00000272236	Chromatin interaction
ENSG00000214922	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv20940	chr6:29653954-29923410	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv428475	chr6:29659525-29763392	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv428139	chr6:29659525-29892317	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
4	nsv427749	chr6:29659525-29975144	Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	nsv508397	chr6:29663132-29761448	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	esv1821077	chr6:29670915-29726207	Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	esv1794141	chr6:29670915-29765814	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
8	nsv883531	chr6:29692562-29705402	Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv10809	chr6:29692573-29794119	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
10	esv3386435	chr6:29702223-29704171	Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv340061	chr6:29703137-29703142	Weak transcription Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29692200-29715800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:29692400-29715800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:29692800-29712000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:29693200-29711400	Weak transcription	Pancreas	Pancrea
5	chr6:29693400-29715600	Weak transcription	Esophagus	oesophagus
6	chr6:29693600-29715600	Weak transcription	NHLF	lung
7	chr6:29693800-29705400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:29693800-29715400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr6:29693800-29716000	Weak transcription	Small Intestine	intestine
10	chr6:29694000-29707000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr6:29694000-29711200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr6:29694000-29711400	Weak transcription	Gastric	stomach
13	chr6:29694000-29712200	Weak transcription	Aorta	Aorta
14	chr6:29694000-29715600	Weak transcription	Colon Smooth Muscle	Colon
15	chr6:29694200-29705600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:29696000-29705600	Weak transcription	Right Ventricle	heart
17	chr6:29696000-29715600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr6:29696000-29715600	Weak transcription	Ovary	ovary
19	chr6:29696200-29703800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr6:29696200-29703800	Weak transcription	Left Ventricle	heart
21	chr6:29696200-29705600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr6:29696200-29705800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr6:29696200-29711800	Weak transcription	Adipose Nuclei	Adipose
24	chr6:29696200-29715200	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr6:29696200-29715600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr6:29696200-29715600	Weak transcription	Liver	Liver
27	chr6:29696400-29710800	Weak transcription	Lung	lung
28	chr6:29696400-29711400	Weak transcription	Spleen	Spleen
29	chr6:29696400-29711800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr6:29696400-29712000	Weak transcription	Duodenum Mucosa	Duodenum
31	chr6:29696400-29715400	Weak transcription	Stomach Smooth Muscle	stomach
32	chr6:29696600-29715600	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr6:29696800-29714600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr6:29696800-29715800	Weak transcription	Colonic Mucosa	Colon
35	chr6:29699200-29712400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr6:29700000-29715200	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr6:29700600-29711600	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr6:29702000-29711200	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr6:29702000-29711600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr6:29702200-29705400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr6:29702400-29705600	Weak transcription	NHDF-Ad	bronchial
42	chr6:29702400-29709800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr6:29702400-29715400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr6:29702600-29707200	Weak transcription	NHEK	skin
45	chr6:29702600-29715400	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr6:29702800-29703600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr6:29702800-29705600	Weak transcription	HMEC	breast
48	chr6:29702800-29712000	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr6:29702800-29712800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr6:29702800-29713800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links