Variant report

Variant	rs2396133
Chromosome Location	chr7:109197067-109197068
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10267307	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10499979	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10953620	0.84[ASN][1000 genomes]
rs11521007	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12536153	0.81[ASN][1000 genomes]
rs12705613	0.84[ASN][1000 genomes]
rs12705619	0.81[ASN][1000 genomes]
rs13238416	0.81[ASN][1000 genomes]
rs13239845	0.82[ASN][1000 genomes]
rs1357685	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1464744	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1524271	0.81[EUR][1000 genomes]
rs1524273	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1524277	0.82[ASN][1000 genomes]
rs1616510	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1721445	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1721447	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1721448	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1721898	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1721899	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1721903	0.81[ASN][1000 genomes]
rs1721908	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17463939	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17464044	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1880236	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1880237	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2103123	0.83[EUR][1000 genomes]
rs2140585	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2140587	0.84[EUR][1000 genomes]
rs56165817	0.84[EUR][1000 genomes]
rs62473267	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023379	chr7:109003574-109355234	Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv608079	chr7:109098364-109862289	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:109187800-109198000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:109188000-109199200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr7:109188000-109211000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr7:109192600-109203600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:109193200-109198000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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