Variant report

Variant	rs2396323
Chromosome Location	chr3:68204939-68204940
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1000896	0.95[GIH][hapmap]
rs1007583	0.81[CEU][hapmap];0.84[TSI][hapmap]
rs13062033	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13068860	0.81[CEU][hapmap]
rs13070641	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13090817	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13097074	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1388492	0.81[CEU][hapmap];0.81[TSI][hapmap]
rs1388493	0.81[CEU][hapmap]
rs1595491	1.00[CHB][hapmap];0.96[CHD][hapmap];0.93[JPT][hapmap];1.00[ASN][1000 genomes]
rs1866290	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs2396322	0.81[CEU][hapmap]
rs4241393	0.81[CEU][hapmap]
rs4276186	0.81[CEU][hapmap];0.81[TSI][hapmap]
rs4446218	0.81[CEU][hapmap];0.81[TSI][hapmap]
rs4447769	0.80[CEU][hapmap]
rs4449324	0.81[CEU][hapmap]
rs4459906	0.81[CEU][hapmap];0.81[TSI][hapmap]
rs4478080	0.81[CEU][hapmap];0.81[TSI][hapmap]
rs4855495	0.80[CEU][hapmap]
rs6549021	0.95[GIH][hapmap]
rs6794104	0.81[CEU][hapmap];0.81[TSI][hapmap]
rs6806747	0.85[CEU][hapmap]
rs7617075	0.90[GIH][hapmap]
rs7618868	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs7628811	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];1.00[TSI][hapmap]
rs7638281	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9843449	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002010	chr3:67785913-68312064	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1009871	chr3:67862617-68312064	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv536583	chr3:67862617-68312064	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv2752014	chr3:68091879-68416989	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv1007450	chr3:68094416-68346546	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv876925	chr3:68180422-68288626	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv876926	chr3:68204939-68282529	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2396323	SNORA70B	trans	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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