Variant report

Variant	rs2396537
Chromosome Location	chr7:112078071-112078072
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:112077208..112079280-chr7:112082321..112084292,2	MCF-7	breast:
2	chr7:112076700..112078791-chr7:112080179..112082197,2	MCF-7	breast:
3	chr7:112076794..112080482-chr7:112087527..112092392,8	K562	blood:
4	chr7:112077492..112080766-chr7:112088015..112091487,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000006652	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1015417	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1557698	0.91[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.84[TSI][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2520468	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2520469	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2520472	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2520478	0.81[CHB][hapmap]
rs2520479	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2520480	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2520481	0.91[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2520483	0.95[CEU][hapmap];0.91[CHB][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2520484	0.91[CEU][hapmap];0.95[CHB][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2523036	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2523043	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2708593	0.86[CEU][hapmap];0.91[CHB][hapmap];0.84[ASN][1000 genomes]
rs2708599	0.89[CHB][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36113101	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6977129	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs727807	0.91[CHB][hapmap];0.85[CHD][hapmap]
rs728273	0.95[CEU][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9640740	0.91[CHB][hapmap];0.93[CHD][hapmap];0.87[ASN][1000 genomes]
rs991632	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv831097	chr7:112000837-112113173	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	esv1801262	chr7:112071795-112104179	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112061000-112089800	Weak transcription	Aorta	Aorta
2	chr7:112064200-112088400	Weak transcription	Psoas Muscle	Psoas
3	chr7:112065800-112079800	Weak transcription	Pancreas	Pancrea
4	chr7:112073800-112082400	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr7:112075600-112079600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr7:112075800-112089800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr7:112077800-112079000	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links