Variant report

Variant	rs2397173
Chromosome Location	chr6:54680757-54680758
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4715487	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6933243	1.00[EUR][1000 genomes]
rs925055	0.88[EUR][1000 genomes]
rs9395995	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54679200-54681800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:54679200-54681800	Weak transcription	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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