Variant report

Variant	rs2397223
Chromosome Location	chr6:56258540-56258541
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1008768	0.82[CHB][hapmap]
rs1008769	0.86[CHB][hapmap]
rs1018414	0.81[CHB][hapmap]
rs1018415	0.86[CHB][hapmap]
rs11968073	0.82[CHB][hapmap]
rs13206552	0.86[CHB][hapmap]
rs2206528	0.80[CHB][hapmap]
rs2206530	0.86[CHB][hapmap]
rs2397221	0.85[CHB][hapmap];0.81[ASN][1000 genomes]
rs6915564	0.81[CHB][hapmap]
rs6936834	0.81[ASN][1000 genomes]
rs7775847	0.81[CHB][hapmap]
rs926530	0.82[CHB][hapmap]
rs9370527	0.86[CHB][hapmap]
rs9382627	0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv830666	chr6:56243743-56419599	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56247400-56263600	Weak transcription	Small Intestine	intestine
2	chr6:56253000-56282600	Weak transcription	Aorta	Aorta
3	chr6:56253200-56258800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:56253600-56263000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:56253800-56258800	Weak transcription	HepG2	liver
6	chr6:56253800-56263400	Weak transcription	Hela-S3	cervix
7	chr6:56258400-56258600	Active TSS	K562	blood
8	chr6:56258400-56258800	Active TSS	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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