Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10948879	0.81[AMR][1000 genomes]
rs1115159	0.82[ASN][1000 genomes]
rs148109	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1503146	0.87[ASN][1000 genomes]
rs1503147	0.87[ASN][1000 genomes]
rs171224	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs181155	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2207025	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2207026	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs239779	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs239781	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs239783	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs239790	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs239792	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs239796	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs239801	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs239813	0.90[EUR][1000 genomes]
rs239837	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs239850	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2816811	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2816812	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4141552	0.87[ASN][1000 genomes]
rs6459034	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6459035	0.83[ASN][1000 genomes]
rs7453866	0.82[ASN][1000 genomes]
rs9370337	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2763553	chr6:54687979-54820487	Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54739800-54763000	Weak transcription	Small Intestine	intestine
2	chr6:54744400-54761000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr6:54752200-54759000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:54757200-54763000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:54757800-54760600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:54757800-54763200	Weak transcription	NHEK	skin
7	chr6:54758000-54761200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:54758000-54769400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr6:54758000-54775000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr6:54758400-54761000	Weak transcription	HMEC	breast
11	chr6:54758600-54759600	Enhancers	Rectal Mucosa Donor 31	rectum

Quick Search: