Variant report

Variant	rs2398901
Chromosome Location	chr9:96897033-96897034
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96896364..96898799-chr9:96902522..96904654,2	MCF-7	breast:
2	chr9:96894776..96897921-chr9:96927348..96930276,4	MCF-7	breast:
3	chr9:96889508..96892121-chr9:96896639..96899163,2	K562	blood:

Variant related genes	Relation type
ENSG00000269946	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 2 )

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482457	chr9:96813852-96996170	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	217 gene(s)	inside rSNPs	diseases
2	nsv831655	chr9:96834042-97042009	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	218 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2398901	FBP2	cis	parietal	SCAN
rs2398901	ROR2	cis	parietal	SCAN

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96896000-96897200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr9:96896000-96897200	Enhancers	Left Ventricle	heart
3	chr9:96896000-96897200	Enhancers	Lung	lung
4	chr9:96896000-96897400	Enhancers	Aorta	Aorta
5	chr9:96896200-96897600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr9:96896400-96897600	Enhancers	NHEK	skin
7	chr9:96896400-96897800	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr9:96896400-96897800	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr9:96896400-96898000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr9:96896400-96898200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr9:96896400-96902400	Enhancers	HMEC	breast
12	chr9:96896600-96897200	Enhancers	Ovary	ovary
13	chr9:96896600-96897200	Enhancers	Right Ventricle	heart
14	chr9:96896600-96897400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr9:96896600-96897400	Enhancers	Psoas Muscle	Psoas
16	chr9:96896800-96897200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr9:96896800-96897200	Enhancers	Esophagus	oesophagus
18	chr9:96896800-96897200	Flanking Active TSS	Stomach Smooth Muscle	stomach
19	chr9:96896800-96897400	Enhancers	Duodenum Mucosa	Duodenum
20	chr9:96896800-96897800	Enhancers	Small Intestine	intestine
21	chr9:96896800-96898000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr9:96896800-96898000	Enhancers	Adipose Nuclei	Adipose
23	chr9:96896800-96898000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr9:96896800-96898200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
25	chr9:96896800-96898200	Enhancers	Colon Smooth Muscle	Colon
26	chr9:96896800-96898200	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr9:96896800-96898400	Enhancers	Rectal Smooth Muscle	rectum
28	chr9:96896800-96901800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr9:96896800-96902200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr9:96897000-96897200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr9:96897000-96897200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr9:96897000-96897200	Enhancers	Osteobl	bone
33	chr9:96897000-96897600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr9:96897000-96897800	Enhancers	HSMM	muscle
35	chr9:96897000-96898000	Enhancers	Fetal Stomach	stomach
36	chr9:96897000-96898200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr9:96897000-96898200	Enhancers	Fetal Lung	lung
38	chr9:96897000-96898200	Enhancers	HSMMtube	muscle
39	chr9:96897000-96898400	Enhancers	HUVEC	blood vessel
40	chr9:96897000-96900800	Weak transcription	Right Atrium	heart

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