Variant report

Variant	rs2400275
Chromosome Location	chr3:134104000-134104001
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1077718	1.00[JPT][hapmap]
rs11711403	1.00[CEU][hapmap];0.82[CHB][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11718883	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1366065	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1366066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2052831	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2400274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2400276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2895675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34910025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7614371	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522171	chr3:133889405-134156571	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3522172	chr3:133889405-134156571	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv967067	chr3:134101913-134104793	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134097400-134104000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:134098000-134107200	Weak transcription	Lung	lung
3	chr3:134098000-134111200	Weak transcription	Right Atrium	heart
4	chr3:134101200-134104000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:134101200-134104000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:134101200-134104200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr3:134101200-134106200	Weak transcription	Fetal Muscle Leg	muscle
8	chr3:134101200-134108000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr3:134101400-134104000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:134101400-134104200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr3:134101400-134106600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr3:134101400-134107400	Weak transcription	Fetal Lung	lung
13	chr3:134101400-134111600	Weak transcription	Pancreas	Pancrea
14	chr3:134102000-134107800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr3:134102000-134111600	Weak transcription	Esophagus	oesophagus
16	chr3:134103800-134104200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr3:134103800-134104400	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr3:134104000-134104200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr3:134104000-134104400	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr3:134104000-134104400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr3:134104000-134104400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr3:134104000-134104600	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr3:134104000-134104800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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