Variant report

Variant	rs2400505
Chromosome Location	chr5:147643079-147643080
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:147643047-147643187	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
SPINK13	TF binding region

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10037138	0.90[ASN][1000 genomes]
rs10038416	0.84[ASN][1000 genomes]
rs10045567	0.86[ASN][1000 genomes]
rs10055415	0.92[ASN][1000 genomes]
rs10058023	0.92[ASN][1000 genomes]
rs10067624	0.91[ASN][1000 genomes]
rs10071354	0.92[ASN][1000 genomes]
rs10075545	0.86[ASN][1000 genomes]
rs10078359	0.92[ASN][1000 genomes]
rs1023714	0.92[ASN][1000 genomes]
rs10463281	0.92[ASN][1000 genomes]
rs10463282	0.91[ASN][1000 genomes]
rs10463404	0.91[ASN][1000 genomes]
rs10463405	0.91[ASN][1000 genomes]
rs10477366	0.92[ASN][1000 genomes]
rs1158939	0.92[ASN][1000 genomes]
rs1158940	0.92[ASN][1000 genomes]
rs1159204	0.92[ASN][1000 genomes]
rs1159205	0.92[ASN][1000 genomes]
rs12516071	0.92[ASN][1000 genomes]
rs12517179	0.86[ASN][1000 genomes]
rs12653739	0.92[ASN][1000 genomes]
rs13152992	0.92[ASN][1000 genomes]
rs13155371	0.92[ASN][1000 genomes]
rs13178303	0.91[ASN][1000 genomes]
rs13179719	0.91[ASN][1000 genomes]
rs1368307	0.92[ASN][1000 genomes]
rs1368308	0.92[ASN][1000 genomes]
rs1368309	0.92[ASN][1000 genomes]
rs1368310	0.92[ASN][1000 genomes]
rs1368311	0.92[ASN][1000 genomes]
rs1368313	0.92[ASN][1000 genomes]
rs1432693	0.86[ASN][1000 genomes]
rs1432694	0.92[ASN][1000 genomes]
rs1432695	0.92[ASN][1000 genomes]
rs1432696	0.90[ASN][1000 genomes]
rs1432698	0.92[ASN][1000 genomes]
rs1432699	0.91[ASN][1000 genomes]
rs1432700	0.91[ASN][1000 genomes]
rs1432701	0.92[ASN][1000 genomes]
rs1432702	0.92[ASN][1000 genomes]
rs1583284	0.92[ASN][1000 genomes]
rs1897534	0.92[ASN][1000 genomes]
rs2082389	0.92[ASN][1000 genomes]
rs2400500	0.92[ASN][1000 genomes]
rs2895730	0.90[ASN][1000 genomes]
rs2963727	0.92[ASN][1000 genomes]
rs2963728	0.88[ASN][1000 genomes]
rs4470757	0.92[ASN][1000 genomes]
rs4532356	0.92[ASN][1000 genomes]
rs4705239	0.92[ASN][1000 genomes]
rs6876753	0.86[ASN][1000 genomes]
rs6893320	0.83[ASN][1000 genomes]
rs7715343	0.92[ASN][1000 genomes]
rs7726415	0.92[ASN][1000 genomes]
rs7732168	0.92[ASN][1000 genomes]
rs9325090	0.92[ASN][1000 genomes]
rs9325091	0.92[ASN][1000 genomes]
rs9325092	0.92[ASN][1000 genomes]
rs986673	0.86[ASN][1000 genomes]
rs9885303	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883015	chr5:147404281-147751035	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv883016	chr5:147640718-147689700	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv883017	chr5:147640718-147689700	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv883018	chr5:147640718-147691470	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147618800-147647600	Weak transcription	Hela-S3	cervix
2	chr5:147635000-147647800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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