Variant report

Variant	rs2401404
Chromosome Location	chr12:9966969-9966970
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:9901588..9903730-chr12:9963848..9968130,4	K562	blood:
2	chr12:9966552..9967437-chr12:10060979..10062470,4	K562	blood:
3	chr12:9966403..9967529-chr12:10077074..10079200,18	MCF-7	breast:
4	chr12:9966658..9967409-chr12:10077781..10079121,6	MCF-7	breast:
5	chr12:9966509..9967473-chr12:10078086..10079366,6	K562	blood:
6	chr12:9966874..9967473-chr12:10162556..10163093,2	MCF-7	breast:
7	chr12:9965884..9968013-chr12:10078190..10080752,2	MCF-7	breast:

rs_ID	r²[population]
rs2041701	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs2192442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6488223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9966200-9967000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
2	chr12:9966200-9967000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
3	chr12:9966200-9967000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
4	chr12:9966200-9967000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
5	chr12:9966200-9967000	Active TSS	Primary T killer memory cells from peripheral blood	blood
6	chr12:9966200-9967000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr12:9966200-9967000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr12:9966200-9967000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr12:9966200-9967000	Flanking Active TSS	Fetal Thymus	thymus
10	chr12:9966200-9967000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr12:9966200-9967200	Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr12:9966200-9967200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
13	chr12:9966400-9967000	Flanking Active TSS	H1 Cell Line	embryonic stem cell
14	chr12:9966400-9967000	Active TSS	H9 Cell Line	embryonic stem cell
15	chr12:9966400-9967000	Active TSS	HUES48 Cell Line	embryonic stem cell
16	chr12:9966400-9967000	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr12:9966400-9967000	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
18	chr12:9966400-9967000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr12:9966400-9967000	Flanking Active TSS	Primary B cells from peripheral blood	blood
20	chr12:9966400-9967000	Active TSS	Primary T helper naive cells from peripheral blood	blood
21	chr12:9966400-9967000	Flanking Bivalent TSS/Enh	Primary T helper 17 cells PMA-I stimulated	--
22	chr12:9966400-9967000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
23	chr12:9966400-9967000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr12:9966400-9967000	Flanking Active TSS	Adipose Nuclei	Adipose
25	chr12:9966400-9967000	Active TSS	Brain Anterior Caudate	brain
26	chr12:9966400-9967000	Flanking Active TSS	Esophagus	oesophagus
27	chr12:9966400-9967000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
28	chr12:9966400-9967000	Enhancers	Pancreas	Pancrea
29	chr12:9966400-9967000	Active TSS	Rectal Mucosa Donor 29	rectum
30	chr12:9966400-9967000	Flanking Active TSS	HMEC	breast
31	chr12:9966400-9967200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr12:9966400-9967200	Enhancers	Spleen	Spleen
33	chr12:9966400-9967200	Flanking Active TSS	Dnd41	blood
34	chr12:9966600-9967000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
35	chr12:9966600-9967000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
36	chr12:9966600-9967000	Active TSS	HUES64 Cell Line	embryonic stem cell
37	chr12:9966600-9967000	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr12:9966600-9967000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr12:9966600-9967000	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr12:9966600-9967000	Active TSS	Primary T cells from cord blood	blood
41	chr12:9966600-9967000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
42	chr12:9966600-9967000	Flanking Active TSS	Liver	Liver
43	chr12:9966600-9967000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
44	chr12:9966600-9967000	Active TSS	Brain Inferior Temporal Lobe	brain
45	chr12:9966600-9967000	Bivalent Enhancer	Brain Dorsolateral Prefrontal Cortex	brain
46	chr12:9966600-9967000	Active TSS	Brain Substantia Nigra	brain
47	chr12:9966600-9967000	Active TSS	Colonic Mucosa	Colon
48	chr12:9966600-9967000	Active TSS	Duodenum Smooth Muscle	Duodenum
49	chr12:9966600-9967000	Flanking Active TSS	Placenta	Placenta
50	chr12:9966600-9967000	Active TSS	Rectal Smooth Muscle	rectum

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