Variant report

Variant	rs2403225
Chromosome Location	chr11:9983125-9983126
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10770095	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7124455	1.00[AMR][1000 genomes]
rs7930396	1.00[AMR][1000 genomes]
rs9919621	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv896988	chr11:9912052-10012511	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv896989	chr11:9951968-10059623	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	esv1819684	chr11:9973062-10012511	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9952800-9995200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:9968000-9984000	Weak transcription	Primary B cells from cord blood	blood
3	chr11:9968000-9984200	Weak transcription	Fetal Kidney	kidney
4	chr11:9973000-9986000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr11:9973800-10010600	Weak transcription	Fetal Brain Male	brain
6	chr11:9974200-9994400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr11:9974200-9994600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr11:9974200-9994800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr11:9974200-9999000	Weak transcription	Fetal Heart	heart
10	chr11:9974200-9999000	Weak transcription	HSMMtube	muscle
11	chr11:9975400-9985600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:9977000-9994400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr11:9978600-9986000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:9978800-9985000	Weak transcription	Small Intestine	intestine
15	chr11:9979400-9986000	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr11:9979400-9995000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr11:9979600-9985600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr11:9979600-9985800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:9979600-9994600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr11:9979800-9987400	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr11:9979800-9999200	Weak transcription	NH-A	brain
22	chr11:9980200-9983800	Strong transcription	Adipose Nuclei	Adipose
23	chr11:9980200-9984800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:9980200-9985800	Strong transcription	Liver	Liver
25	chr11:9980200-9985800	Strong transcription	Placenta	Placenta
26	chr11:9980200-9986000	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr11:9980400-9983400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr11:9981000-9983400	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr11:9981000-10020000	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr11:9981200-9983200	Weak transcription	NHDF-Ad	bronchial
31	chr11:9981200-9984400	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr11:9981200-9988400	Weak transcription	HMEC	breast
33	chr11:9981200-9990000	Weak transcription	A549	lung
34	chr11:9981200-9990600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr11:9981200-9995000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr11:9981200-10004200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr11:9981200-10009200	Weak transcription	Brain Germinal Matrix	brain
38	chr11:9981400-9983200	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr11:9981400-9983400	Weak transcription	Primary hematopoietic stem cells	blood
40	chr11:9981400-9984400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr11:9981400-9984400	Weak transcription	Fetal Muscle Trunk	muscle
42	chr11:9981400-9984800	Weak transcription	Fetal Intestine Large	intestine
43	chr11:9981400-9985000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr11:9981400-9985400	Weak transcription	Fetal Intestine Small	intestine
45	chr11:9981400-9985600	Weak transcription	Rectal Smooth Muscle	rectum
46	chr11:9981400-9986600	Weak transcription	Pancreas	Pancrea
47	chr11:9981400-9987000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr11:9981400-9989000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr11:9981400-9989000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr11:9981400-9989600	Weak transcription	Rectal Mucosa Donor 29	rectum

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