Variant report
| Variant | rs2405509 |
|---|---|
| Chromosome Location | chr12:41258253-41258254 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs1083206 | 0.87[ASN][1000 genomes] |
| rs11178966 | 0.87[ASN][1000 genomes] |
| rs11179174 | 0.87[ASN][1000 genomes] |
| rs12296475 | 0.87[ASN][1000 genomes] |
| rs12297672 | 0.89[ASN][1000 genomes] |
| rs12307865 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12316203 | 1.00[ASN][1000 genomes] |
| rs12316567 | 0.89[ASN][1000 genomes] |
| rs13328933 | 0.87[ASN][1000 genomes] |
| rs1442183 | 0.87[ASN][1000 genomes] |
| rs1442190 | 1.00[JPT][hapmap] |
| rs1866996 | 0.87[ASN][1000 genomes] |
| rs278903 | 0.87[ASN][1000 genomes] |
| rs278906 | 1.00[JPT][hapmap] |
| rs278914 | 0.87[ASN][1000 genomes] |
| rs280355 | 0.87[ASN][1000 genomes] |
| rs397967 | 0.87[ASN][1000 genomes] |
| rs59599863 | 0.87[ASN][1000 genomes] |
| rs61443681 | 0.87[ASN][1000 genomes] |
| rs61653748 | 0.89[ASN][1000 genomes] |
| rs67249613 | 0.87[ASN][1000 genomes] |
| rs693762 | 0.87[ASN][1000 genomes] |
| rs7134389 | 0.87[ASN][1000 genomes] |
| rs7139018 | 0.87[ASN][1000 genomes] |
| rs7301266 | 0.87[ASN][1000 genomes] |
| rs7312528 | 0.87[ASN][1000 genomes] |
| rs73275677 | 0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs73275694 | 0.87[ASN][1000 genomes] |
| rs73277750 | 0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv427909 | chr12:41054306-41322257 | Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv832380 | chr12:41132306-41323961 | Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:41226800-41266400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
