Variant report

Variant	rs2405721
Chromosome Location	chr15:76063637-76063638
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr15:76063334-76063730	A549	lung:	n/a	n/a
2	SP1	chr15:76063489-76063820	H1-hESC	embryonic stem cell:	n/a	n/a
3	HNF4A	chr15:76063437-76063686	HepG2	liver:	n/a	chr15:76063531-76063543 chr15:76063530-76063545 chr15:76063530-76063545 chr15:76063530-76063544
4	RXRA	chr15:76063389-76063760	HepG2	liver:	n/a	chr15:76063651-76063660
5	JUND	chr15:76063435-76063641	HepG2	liver:	n/a	n/a
6	TCF12	chr15:76063364-76063710	HepG2	liver:	n/a	n/a
7	FOXA1	chr15:76063415-76063732	HepG2	liver:	n/a	n/a
8	POLR2A	chr15:76063411-76063900	H1-hESC	embryonic stem cell:	n/a	n/a
9	HEY1	chr15:76063397-76063766	HepG2	liver:	n/a	n/a
10	HEY1	chr15:76063488-76063642	HepG2	liver:	n/a	n/a
11	SPI1	chr15:76063442-76063744	K562	blood:	n/a	chr15:76063595-76063604 chr15:76063593-76063606
12	TCF12	chr15:76063496-76063699	H1-hESC	embryonic stem cell:	n/a	n/a
13	POU2F2	chr15:76063460-76064151	GM12878	blood:	n/a	n/a
14	MAX	chr15:76063499-76063812	H1-hESC	embryonic stem cell:	n/a	n/a
15	POLR2A	chr15:76063492-76063797	H1-hESC	embryonic stem cell:	n/a	n/a
16	SIN3AK20	chr15:76063524-76063642	HepG2	liver:	n/a	n/a
17	HDAC2	chr15:76063600-76063810	H1-hESC	embryonic stem cell:	n/a	n/a
18	JUND	chr15:76063399-76063657	HepG2	liver:	n/a	n/a
19	SPI1	chr15:76063464-76063714	K562	blood:	n/a	chr15:76063595-76063604 chr15:76063593-76063606
20	SPI1	chr15:76063478-76063743	GM12878	blood:	n/a	chr15:76063595-76063604 chr15:76063593-76063606
21	TCF12	chr15:76063482-76063659	GM12878	blood:	n/a	n/a
22	MAX	chr15:76063558-76063826	H1-hESC	embryonic stem cell:	n/a	n/a
23	POLR2A	chr15:76063413-76063796	SK-N-MC	brain:	n/a	n/a
24	FOXA1	chr15:76063244-76063775	HepG2	liver:	n/a	n/a
25	E2F6	chr15:76063544-76063812	H1-hESC	embryonic stem cell:	n/a	n/a
26	SPI1	chr15:76063412-76063785	GM12891	blood:	n/a	chr15:76063595-76063604 chr15:76063593-76063606
27	YY1	chr15:76063466-76063746	H1-hESC	embryonic stem cell:	n/a	n/a
28	SP1	chr15:76063292-76063818	HepG2	liver:	n/a	chr15:76063422-76063436
29	FOXA1	chr15:76063183-76063831	HepG2	liver:	n/a	n/a
30	MAX	chr15:76063450-76063818	H1-hESC	embryonic stem cell:	n/a	n/a
31	POLR2A	chr15:76063340-76064387	H1-hESC	embryonic stem cell:	n/a	n/a
32	E2F6	chr15:76063561-76063822	H1-hESC	embryonic stem cell:	n/a	n/a
33	FOSL2	chr15:76063373-76063831	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000187812	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv527186	chr15:75924443-76107730	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
3	nsv904396	chr15:75961518-76071105	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
4	nsv974599	chr15:76033068-76101142	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
5	esv3427661	chr15:76063097-76066495	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76061000-76067400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr15:76062000-76067200	Enhancers	Liver	Liver
3	chr15:76062400-76065400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr15:76062400-76065600	Enhancers	HepG2	liver
5	chr15:76062600-76063800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr15:76062600-76064000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr15:76062600-76064400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr15:76062800-76063800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr15:76062800-76063800	Enhancers	Primary hematopoietic stem cells	blood
10	chr15:76062800-76068000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr15:76062800-76068400	Weak transcription	Pancreas	Pancrea
12	chr15:76063000-76063800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr15:76063000-76063800	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr15:76063000-76063800	Enhancers	A549	lung
15	chr15:76063000-76064000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr15:76063000-76064400	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr15:76063000-76064600	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr15:76063200-76067800	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr15:76063200-76068000	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr15:76063600-76064000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr15:76063600-76068000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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