Variant report

Variant	rs2405895
Chromosome Location	chr15:76029320-76029321
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10467951	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2255254	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2255269	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2405897	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2405898	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2405902	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2593286	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2593293	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2593298	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2604411	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2675216	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2675217	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2675220	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4886456	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4886458	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4886735	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs749161	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3445070	chr15:75623136-76045948	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
2	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
3	nsv527186	chr15:75924443-76107730	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
4	nsv904392	chr15:75930757-76039262	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
5	nsv904394	chr15:75948671-76039262	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv904396	chr15:75961518-76071105	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76013800-76029800	Weak transcription	HSMM	muscle
2	chr15:76020600-76030200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:76021000-76030200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr15:76021000-76030200	Weak transcription	HMEC	breast
5	chr15:76021400-76029600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr15:76024200-76029400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr15:76024200-76029400	Weak transcription	Fetal Brain Female	brain
8	chr15:76024400-76030400	Weak transcription	Primary B cells from cord blood	blood
9	chr15:76024600-76030200	Weak transcription	Brain Hippocampus Middle	brain
10	chr15:76024800-76029600	Weak transcription	Brain Germinal Matrix	brain
11	chr15:76024800-76030400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr15:76025000-76030200	Weak transcription	NHDF-Ad	bronchial
13	chr15:76025000-76030400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr15:76025200-76030200	Weak transcription	Colonic Mucosa	Colon
15	chr15:76025200-76030200	Weak transcription	Fetal Heart	heart
16	chr15:76025200-76030200	Weak transcription	Fetal Intestine Large	intestine
17	chr15:76025200-76030400	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr15:76025200-76030400	Weak transcription	Right Atrium	heart
19	chr15:76025400-76029400	Weak transcription	Adipose Nuclei	Adipose
20	chr15:76025400-76029600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr15:76025400-76030200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr15:76025400-76030200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr15:76025400-76030200	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr15:76025400-76030200	Weak transcription	K562	blood
25	chr15:76025400-76030400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr15:76025600-76029400	Weak transcription	Fetal Brain Male	brain
27	chr15:76025600-76029600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr15:76025600-76029600	Weak transcription	Liver	Liver
29	chr15:76025600-76029800	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr15:76025600-76030200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr15:76025600-76030200	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr15:76025600-76030200	Weak transcription	Brain Cingulate Gyrus	brain
33	chr15:76025600-76030200	Weak transcription	Duodenum Mucosa	Duodenum
34	chr15:76025600-76030200	Weak transcription	Fetal Lung	lung
35	chr15:76025600-76030200	Weak transcription	Ovary	ovary
36	chr15:76025600-76030200	Weak transcription	Pancreas	Pancrea
37	chr15:76025600-76030200	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr15:76025600-76030200	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr15:76025600-76030200	Weak transcription	A549	lung
40	chr15:76025600-76030200	Weak transcription	Hela-S3	cervix
41	chr15:76025600-76030400	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr15:76025600-76030400	Weak transcription	Brain Anterior Caudate	brain
43	chr15:76025600-76030400	Weak transcription	Right Ventricle	heart
44	chr15:76025800-76029800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr15:76025800-76030200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr15:76026400-76030400	Weak transcription	Lung	lung
47	chr15:76026600-76030200	Enhancers	Primary monocytes fromperipheralblood	blood
48	chr15:76026600-76030200	Weak transcription	NH-A	brain
49	chr15:76027000-76030200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr15:76027000-76030200	Weak transcription	Fetal Intestine Small	intestine

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