Variant report

Variant	rs2405903
Chromosome Location	chr15:76009287-76009288
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:76009243-76009649	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chr15:76009254-76009560	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76008615..76011064-chr15:76015741..76018140,2	MCF-7	breast:
2	chr15:76008238..76010676-chr15:76011574..76015052,3	K562	blood:

Variant related genes	Relation type
CSPG4	TF binding region
ENSG00000182950	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4886953	0.83[EUR][1000 genomes]
rs8023610	0.85[ASN][1000 genomes]
rs8032669	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531901	chr15:75600108-76019966	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	esv3445070	chr15:75623136-76045948	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv1048028	chr15:75637515-76019967	Strong transcription Genic enhancers Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	161 gene(s)	inside rSNPs	diseases
4	nsv542436	chr15:75637515-76019967	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	161 gene(s)	inside rSNPs	diseases
5	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
6	nsv527186	chr15:75924443-76107730	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
7	nsv904392	chr15:75930757-76039262	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
8	nsv904394	chr15:75948671-76039262	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
9	nsv904396	chr15:75961518-76071105	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76005200-76013400	Weak transcription	Esophagus	oesophagus
2	chr15:76005600-76010000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr15:76005600-76010000	Weak transcription	Osteobl	bone
4	chr15:76005600-76016000	Weak transcription	Aorta	Aorta
5	chr15:76005800-76010800	Weak transcription	A549	lung
6	chr15:76006000-76009400	Weak transcription	Left Ventricle	heart
7	chr15:76006000-76009800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr15:76006000-76009800	Weak transcription	Right Atrium	heart
9	chr15:76006000-76010600	Weak transcription	HMEC	breast
10	chr15:76006000-76013400	Weak transcription	Psoas Muscle	Psoas
11	chr15:76006200-76009800	Weak transcription	Right Ventricle	heart
12	chr15:76006200-76010600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr15:76006400-76009400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr15:76006400-76009400	Weak transcription	NHLF	lung
15	chr15:76006400-76009800	Weak transcription	Lung	lung
16	chr15:76006400-76010600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr15:76006400-76010800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr15:76006400-76010800	Weak transcription	NH-A	brain
19	chr15:76006400-76011000	Weak transcription	Ovary	ovary
20	chr15:76006400-76013200	Weak transcription	Fetal Intestine Large	intestine
21	chr15:76006400-76013400	Weak transcription	Fetal Heart	heart
22	chr15:76006400-76013600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr15:76006600-76009800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr15:76006600-76011000	Enhancers	Fetal Muscle Leg	muscle
25	chr15:76006600-76013400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr15:76007000-76010200	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr15:76007400-76011000	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr15:76007600-76011200	Enhancers	Fetal Stomach	stomach
29	chr15:76007800-76011200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr15:76007800-76011600	Enhancers	Placenta	Placenta
31	chr15:76008200-76009400	Weak transcription	Stomach Mucosa	stomach
32	chr15:76008200-76010000	Weak transcription	Rectal Smooth Muscle	rectum
33	chr15:76008200-76011200	Enhancers	Fetal Muscle Trunk	muscle
34	chr15:76008200-76013200	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr15:76008200-76013200	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr15:76008200-76013200	Weak transcription	Spleen	Spleen
37	chr15:76008200-76013400	Weak transcription	Colonic Mucosa	Colon
38	chr15:76008200-76015200	Weak transcription	Duodenum Mucosa	Duodenum
39	chr15:76008200-76016000	Weak transcription	Gastric	stomach
40	chr15:76008400-76009800	Weak transcription	HSMM	muscle
41	chr15:76008400-76009800	Weak transcription	HSMMtube	muscle
42	chr15:76008400-76013400	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr15:76008600-76009600	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr15:76008600-76009800	Weak transcription	Colon Smooth Muscle	Colon
45	chr15:76008600-76009800	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr15:76008600-76010000	Weak transcription	NHDF-Ad	bronchial
47	chr15:76009000-76010200	Enhancers	Liver	Liver
48	chr15:76009000-76010400	Flanking Active TSS	Hela-S3	cervix
49	chr15:76009000-76011400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr15:76009000-76011600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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