Variant report

Variant	rs2406103
Chromosome Location	chr1:47857262-47857263
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10890479	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60078183	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395361	chr1:47857261-47857453	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47847400-47858600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr1:47847600-47858800	Weak transcription	HSMMtube	muscle
3	chr1:47847600-47865200	Weak transcription	GM12878-XiMat	blood
4	chr1:47847600-47872800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:47849400-47858800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:47853200-47857400	Enhancers	HepG2	liver
7	chr1:47855000-47858400	Weak transcription	HSMM	muscle
8	chr1:47856600-47861400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr1:47857000-47858800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links