Variant report

Variant	rs2407752
Chromosome Location	chr11:100657505-100657506
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:100651768..100654603-chr11:100655934..100659680,3	K562	blood:
2	chr11:100651768..100655242-chr11:100655934..100659680,4	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11224442	0.92[CHB][hapmap]
rs11224450	1.00[CHB][hapmap]
rs17095481	0.89[ASW][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.86[LWK][hapmap];0.91[YRI][hapmap]
rs2897755	1.00[CHB][hapmap]
rs674693	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520995	chr11:100163957-100681211	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530643	chr11:100196082-100713156	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2407752	PGR	cis	parietal	SCAN

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100643200-100658000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:100643200-100660000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:100645600-100679800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr11:100645800-100679600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:100649800-100661800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:100652000-100659600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:100653200-100660000	Weak transcription	NHEK	skin
8	chr11:100653400-100660200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr11:100654200-100658400	Enhancers	Stomach Mucosa	stomach
10	chr11:100654400-100658800	Enhancers	Fetal Heart	heart
11	chr11:100654400-100671200	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr11:100655400-100657600	Enhancers	Liver	Liver
13	chr11:100656000-100661800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr11:100656400-100658400	Weak transcription	Psoas Muscle	Psoas
15	chr11:100656400-100660000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr11:100656400-100660000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:100656400-100660000	Weak transcription	Left Ventricle	heart
18	chr11:100656400-100660200	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr11:100656400-100660200	Weak transcription	Gastric	stomach
20	chr11:100656400-100660200	Weak transcription	HSMM	muscle
21	chr11:100656400-100661800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr11:100656600-100658200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr11:100656600-100659600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr11:100656600-100660000	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr11:100656600-100660000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr11:100656600-100660000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr11:100656600-100660000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr11:100656600-100660000	Weak transcription	Right Atrium	heart
29	chr11:100656600-100660000	Weak transcription	K562	blood
30	chr11:100656600-100661200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr11:100656600-100662000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr11:100656600-100662800	Weak transcription	Right Ventricle	heart
33	chr11:100656600-100679600	Weak transcription	Fetal Lung	lung
34	chr11:100656800-100659800	Weak transcription	A549	lung
35	chr11:100656800-100660000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr11:100656800-100660200	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr11:100656800-100660400	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr11:100656800-100660400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr11:100656800-100661800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr11:100656800-100668800	Weak transcription	Duodenum Mucosa	Duodenum
41	chr11:100657000-100660200	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr11:100657000-100661200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr11:100657000-100675600	Weak transcription	Rectal Mucosa Donor 31	rectum

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