Variant report
| Variant | rs240839 |
|---|---|
| Chromosome Location | chr6:159918334-159918335 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:159915631..159918431-chr6:159924756..159927385,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs16890441 | 1.00[ASN][1000 genomes] |
| rs240836 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs240861 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4709340 | 1.00[ASN][1000 genomes] |
| rs55875257 | 0.98[ASN][1000 genomes] |
| rs59722191 | 1.00[ASN][1000 genomes] |
| rs73585056 | 1.00[ASN][1000 genomes] |
| rs73585061 | 1.00[ASN][1000 genomes] |
| rs73585064 | 1.00[ASN][1000 genomes] |
| rs73586917 | 1.00[ASN][1000 genomes] |
| rs73586920 | 1.00[ASN][1000 genomes] |
| rs73586921 | 1.00[ASN][1000 genomes] |
| rs73586924 | 1.00[ASN][1000 genomes] |
| rs73586925 | 1.00[ASN][1000 genomes] |
| rs73586928 | 1.00[ASN][1000 genomes] |
| rs73586930 | 1.00[ASN][1000 genomes] |
| rs73586931 | 0.99[ASN][1000 genomes] |
| rs73586936 | 0.99[ASN][1000 genomes] |
| rs73586939 | 0.97[ASN][1000 genomes] |
| rs7742825 | 0.94[ASN][1000 genomes] |
| rs7743711 | 0.96[ASN][1000 genomes] |
| rs9456410 | 0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2763604 | chr6:159509373-159942955 | Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| 2 | nsv1019191 | chr6:159555100-160043247 | Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 3 | nsv886800 | chr6:159905527-159985424 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv886801 | chr6:159912337-159984005 | Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv1026518 | chr6:159912363-160113542 | Active TSS Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
| 6 | nsv538491 | chr6:159912363-160113542 | Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:159916000-159927400 | Weak transcription | Right Atrium | heart |
