Variant report

Variant	rs2408692
Chromosome Location	chr13:53517693-53517694
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1075693	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1077506	0.80[EUR][1000 genomes]
rs17052824	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17052924	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2018272	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs732949	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7334665	0.83[ASN][1000 genomes]
rs7337967	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73474778	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9591483	0.82[ASN][1000 genomes]
rs9652206	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530719	chr13:53173014-53675953	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv3440613	chr13:53307609-53671072	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53510400-53524400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:53516600-53525600	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr13:53516800-53517800	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr13:53517000-53517800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr13:53517000-53518200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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