Variant report

Variant	rs2408776
Chromosome Location	chr5:126138254-126138255
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:126010491..126012654-chr5:126137907..126139641,2	K562	blood:
2	chr5:125991447..125992724-chr5:126137372..126138316,5	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11241908	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11241910	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11741648	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11748362	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11748369	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11748382	0.81[ASN][1000 genomes]
rs12514715	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13176550	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13181450	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1964723	0.88[EUR][1000 genomes]
rs2036847	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34740558	0.96[ASN][1000 genomes]
rs35091677	0.91[EUR][1000 genomes]
rs35156477	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35500127	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3805738	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3805744	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3828699	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57812062	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6595736	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6595738	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6873056	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6873780	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6874037	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6894559	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72798244	0.81[EUR][1000 genomes]
rs7708419	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7709312	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949054	chr5:125918148-126254480	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv534292	chr5:125993451-126259315	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126114600-126141600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:126114600-126142000	Weak transcription	Spleen	Spleen
3	chr5:126114600-126161600	Weak transcription	Ovary	ovary
4	chr5:126115000-126140400	Weak transcription	Fetal Intestine Large	intestine
5	chr5:126115800-126145800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:126116000-126141600	Weak transcription	Fetal Stomach	stomach
7	chr5:126116400-126140000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr5:126116400-126140200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr5:126116400-126140200	Weak transcription	Thymus	Thymus
10	chr5:126116400-126141000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr5:126116400-126143400	Weak transcription	Primary B cells from cord blood	blood
12	chr5:126116600-126140000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr5:126116600-126147800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr5:126117000-126140800	Weak transcription	Fetal Brain Female	brain
15	chr5:126117800-126141200	Weak transcription	Brain Germinal Matrix	brain
16	chr5:126122600-126141000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr5:126124000-126140200	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr5:126124200-126140200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr5:126124400-126140400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr5:126125400-126146600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr5:126125600-126140400	Weak transcription	Fetal Muscle Trunk	muscle
22	chr5:126127800-126141400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr5:126128800-126145800	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr5:126129200-126140000	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr5:126129200-126141400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr5:126129200-126141600	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr5:126129200-126141800	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr5:126130400-126139800	Weak transcription	Primary B cells from peripheral blood	blood
29	chr5:126130400-126142000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr5:126130400-126165800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr5:126131200-126140400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr5:126131600-126141600	Weak transcription	Fetal Intestine Small	intestine
33	chr5:126132000-126141200	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr5:126132200-126141600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr5:126132200-126161200	Weak transcription	Gastric	stomach
36	chr5:126132400-126140400	Weak transcription	HepG2	liver
37	chr5:126132400-126141800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr5:126133800-126141800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr5:126135200-126147200	Weak transcription	Fetal Brain Male	brain
40	chr5:126135400-126138800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
41	chr5:126135400-126140800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr5:126135800-126139800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr5:126136000-126140000	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr5:126136000-126145600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr5:126136000-126175200	Strong transcription	Dnd41	blood
46	chr5:126136200-126139800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr5:126136200-126139800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr5:126136200-126140000	Weak transcription	Fetal Thymus	thymus
49	chr5:126136200-126142000	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr5:126136200-126142000	Weak transcription	Hela-S3	cervix

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