Variant report

Variant	rs2408866
Chromosome Location	chr5:126566832-126566833
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:126566025..126568909-chr5:126571230..126572731,2	K562	blood:
2	chr5:126364336..126367272-chr5:126565030..126567076,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173926	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1543817	1.00[EUR][1000 genomes]
rs6879718	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024265	chr5:126213004-126691163	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126565400-126570000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:126565600-126569200	Weak transcription	Spleen	Spleen
3	chr5:126565600-126576200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr5:126565800-126568600	Weak transcription	Fetal Muscle Leg	muscle
5	chr5:126565800-126568800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr5:126565800-126569400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr5:126565800-126570800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr5:126566000-126568200	Weak transcription	Primary T cells from cord blood	blood
9	chr5:126566000-126568200	Weak transcription	Brain Anterior Caudate	brain
10	chr5:126566000-126569000	Weak transcription	Esophagus	oesophagus
11	chr5:126566000-126569400	Weak transcription	Thymus	Thymus
12	chr5:126566000-126571600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr5:126566000-126575600	Weak transcription	Adipose Nuclei	Adipose
14	chr5:126566000-126575800	Weak transcription	Pancreas	Pancrea
15	chr5:126566000-126575800	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr5:126566000-126575800	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr5:126566000-126578600	Weak transcription	Primary hematopoietic stem cells	blood
18	chr5:126566200-126569400	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr5:126566200-126571600	Weak transcription	Brain Hippocampus Middle	brain
20	chr5:126566200-126572200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr5:126566200-126572400	Weak transcription	Primary B cells from cord blood	blood
22	chr5:126566600-126575600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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