Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1334873	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1335977	0.85[AFR][1000 genomes]
rs1335986	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1360776	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1413882	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1414545	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1467838	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2105024	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2152083	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2409028	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6420308	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7326175	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7326336	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7335075	0.85[AFR][1000 genomes]
rs766519	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9316707	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9527179	0.82[AFR][1000 genomes]
rs9563203	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9568993	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9568995	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3375545	chr13:54517432-54908108	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv561701	chr13:54711276-54826104	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54722600-54741200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr13:54736800-54741600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr13:54737200-54746600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr13:54739000-54741000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr13:54740200-54743800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr13:54740400-54740600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr13:54740400-54741400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr13:54740400-54744200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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