Variant report

Variant	rs2409206
Chromosome Location	chr21:28815634-28815635
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:28814417..28816406-chr21:28820762..28822994,2	K562	blood:

Variant related genes	Relation type
ENSG00000231236	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs16980566	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16980647	0.87[JPT][hapmap];0.90[MEX][hapmap]
rs1979179	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1979180	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1979181	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2830928	0.89[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs2830930	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2830931	0.89[CEU][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2830932	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2830934	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2830936	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2830937	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2830938	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4353721	0.92[AFR][1000 genomes]
rs4544522	0.95[AFR][1000 genomes]
rs56865146	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57333997	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59472353	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72635039	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72635040	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72635041	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72635042	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067475	chr21:28238746-29046707	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv459229	chr21:28543456-29482488	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv587342	chr21:28543456-29482488	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv916307	chr21:28762455-28905095	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv913667	chr21:28798703-28887357	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv3333927	chr21:28803698-28855312	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv834071	chr21:28806911-28988880	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:28813200-28817600	Weak transcription	Spleen	Spleen

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