Variant report

Variant	rs2409802
Chromosome Location	chr8:11538144-11538145
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:11536053..11539945-chr8:11541528..11543770,4	K562	blood:
2	chr8:11537746..11540064-chr8:11543520..11546705,3	K562	blood:
3	chr8:11514092..11516234-chr8:11537448..11539753,2	K562	blood:
4	chr8:11537885..11539518-chr8:11556542..11558911,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10100742	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv1017865	chr8:11377795-11579954	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1018978	chr8:11438267-11858466	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11528800-11547200	Weak transcription	Pancreas	Pancrea
2	chr8:11534000-11538600	Bivalent/Poised TSS	Fetal Stomach	stomach
3	chr8:11534400-11539400	Active TSS	Left Ventricle	heart
4	chr8:11534400-11539600	Active TSS	Fetal Heart	heart
5	chr8:11534400-11539600	Bivalent/Poised TSS	Fetal Intestine Small	intestine
6	chr8:11534400-11541200	Active TSS	Right Atrium	heart
7	chr8:11535400-11540600	Active TSS	Ovary	ovary
8	chr8:11535600-11541400	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
9	chr8:11535800-11538200	Bivalent/Poised TSS	Stomach Mucosa	stomach
10	chr8:11535800-11538600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
11	chr8:11536600-11538400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
12	chr8:11536800-11539000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
13	chr8:11536800-11539200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
14	chr8:11537000-11538200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
15	chr8:11537200-11538200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
16	chr8:11537200-11538400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr8:11537200-11538600	ZNF genes & repeats	Spleen	Spleen
18	chr8:11537200-11539800	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr8:11537400-11538200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
20	chr8:11537600-11538200	Bivalent Enhancer	Brain Germinal Matrix	brain
21	chr8:11537600-11538200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
22	chr8:11537600-11538600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr8:11537800-11538200	Bivalent/Poised TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr8:11537800-11538400	Bivalent Enhancer	Liver	Liver
25	chr8:11537800-11538800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
26	chr8:11537800-11538800	Bivalent Enhancer	Fetal Intestine Large	intestine
27	chr8:11537800-11539200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
28	chr8:11538000-11538200	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr8:11538000-11538200	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr8:11538000-11538200	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr8:11538000-11538200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr8:11538000-11538200	Bivalent Enhancer	Brain Hippocampus Middle	brain
33	chr8:11538000-11538200	Transcr. at gene 5' and 3'	Gastric	stomach
34	chr8:11538000-11538200	Bivalent Enhancer	Lung	lung
35	chr8:11538000-11538200	Transcr. at gene 5' and 3'	Right Ventricle	heart
36	chr8:11538000-11538400	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr8:11538000-11538400	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell

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