Variant report

Variant	rs2410817
Chromosome Location	chr7:100964409-100964410
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:100941519..100944089-chr7:100963395..100965508,2	K562	blood:
2	chr7:100950840..100954191-chr7:100963498..100966604,5	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNHIT1-1	chr7:100964396-100964425	NR_110115

Variant related genes	Relation type
ENSG00000232301	Chromatin interaction
ENSG00000232445	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv1030604	chr7:100717732-101223465	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	esv2422376	chr7:100743485-101016471	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv464651	chr7:100792810-100971604	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
5	nsv607974	chr7:100792810-100971604	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
6	nsv429788	chr7:100799565-101178565	Weak transcription Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
7	esv2752134	chr7:100800131-101141867	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
8	nsv831076	chr7:100828847-101011674	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
9	esv2422326	chr7:100833449-101000131	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
10	nsv607978	chr7:100861213-100971604	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
11	nsv831077	chr7:100874209-101083930	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
12	nsv1023393	chr7:100904333-101102046	Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
13	esv2752135	chr7:100932330-101135565	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
14	esv2752136	chr7:100932330-101143259	Genic enhancers Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
15	nsv1017098	chr7:100935631-101117541	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
16	nsv539042	chr7:100935631-101117541	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
17	esv2752137	chr7:100938008-101135398	ZNF genes & repeats Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
18	nsv1028170	chr7:100958058-101117541	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
19	nsv539043	chr7:100958058-101117541	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
20	nsv517175	chr7:100960550-101138286	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
21	nsv1034896	chr7:100961416-101135398	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
22	nsv1019056	chr7:100961416-101137314	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
23	nsv1024423	chr7:100963863-101128424	Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
24	nsv1033659	chr7:100963863-101135398	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
25	nsv1018124	chr7:100963863-101137314	Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:100957000-100964600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:100959400-100964600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr7:100959800-100964600	Weak transcription	Aorta	Aorta
4	chr7:100963800-100964800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:100964000-100964600	Enhancers	Primary T cells fromperipheralblood	blood
6	chr7:100964000-100964600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr7:100964000-100964600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr7:100964000-100964600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr7:100964000-100964600	Flanking Active TSS	Brain Anterior Caudate	brain
10	chr7:100964000-100964600	Flanking Active TSS	Brain Germinal Matrix	brain
11	chr7:100964000-100964600	Flanking Active TSS	Colon Smooth Muscle	Colon
12	chr7:100964000-100964600	Enhancers	Placenta	Placenta
13	chr7:100964000-100964600	Flanking Active TSS	Fetal Stomach	stomach
14	chr7:100964000-100964600	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr7:100964000-100964600	Enhancers	Spleen	Spleen
16	chr7:100964000-100964600	Flanking Active TSS	HepG2	liver
17	chr7:100964000-100964800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr7:100964000-100964800	Flanking Active TSS	Adipose Nuclei	Adipose
19	chr7:100964000-100964800	Flanking Active TSS	Brain Angular Gyrus	brain
20	chr7:100964000-100964800	Flanking Active TSS	Fetal Brain Male	brain
21	chr7:100964000-100964800	Flanking Active TSS	Fetal Thymus	thymus
22	chr7:100964000-100964800	Flanking Active TSS	Dnd41	blood
23	chr7:100964000-100965000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
24	chr7:100964000-100965000	Flanking Active TSS	Stomach Smooth Muscle	stomach
25	chr7:100964000-100965400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr7:100964000-100965600	Active TSS	HUES6 Cell Line	embryonic stem cell
27	chr7:100964000-100965600	Active TSS	HUES64 Cell Line	embryonic stem cell
28	chr7:100964000-100965600	Active TSS	iPS-15b Cell Line	embryonic stem cell
29	chr7:100964000-100965600	Active TSS	iPS-20b Cell Line	embryonic stem cell
30	chr7:100964000-100965800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr7:100964000-100965800	Active TSS	Pancreatic Islets	Pancreatic Islet
32	chr7:100964000-100966000	Active TSS	H1 Cell Line	embryonic stem cell
33	chr7:100964000-100966000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr7:100964200-100964600	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr7:100964200-100964600	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr7:100964200-100964600	Enhancers	Primary B cells from cord blood	blood
37	chr7:100964200-100964600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
38	chr7:100964200-100964600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr7:100964200-100964600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
40	chr7:100964200-100964600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
41	chr7:100964200-100964800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
42	chr7:100964200-100964800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr7:100964200-100964800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
44	chr7:100964200-100964800	Flanking Active TSS	Colonic Mucosa	Colon
45	chr7:100964200-100964800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
46	chr7:100964200-100964800	Flanking Active TSS	Fetal Muscle Trunk	muscle
47	chr7:100964200-100964800	Flanking Active TSS	Fetal Muscle Leg	muscle
48	chr7:100964200-100964800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
49	chr7:100964200-100965000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
50	chr7:100964200-100965400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung

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