Variant report

Variant	rs2410979
Chromosome Location	chr5:106556984-106556985
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10043144	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10043242	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1030172	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1030173	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1030174	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10515368	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10900898	0.83[EUR][1000 genomes]
rs11242627	0.81[EUR][1000 genomes]
rs11242632	0.83[ASN][1000 genomes]
rs1159077	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1159078	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1345636	0.82[AMR][1000 genomes]
rs1363311	0.90[ASN][1000 genomes]
rs1363313	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17386596	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1833606	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1990908	0.82[AMR][1000 genomes]
rs2161234	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2410942	0.81[EUR][1000 genomes]
rs2410944	0.81[EUR][1000 genomes]
rs2410951	0.83[EUR][1000 genomes]
rs35814230	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4572985	0.85[ASN][1000 genomes]
rs4957531	0.81[AMR][1000 genomes]
rs4957688	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6596730	0.85[ASN][1000 genomes]
rs6862257	0.81[AMR][1000 genomes]
rs6862498	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6865431	0.81[EUR][1000 genomes]
rs6881511	0.85[ASN][1000 genomes]
rs6895080	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7710595	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7716820	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv823170	chr5:106326293-106673695	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2752056	chr5:106422649-106563101	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv882680	chr5:106493350-106573961	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv882681	chr5:106508913-106573961	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106551800-106557200	Weak transcription	Right Ventricle	heart
2	chr5:106552600-106557200	Weak transcription	Lung	lung

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