Variant report

Variant	rs2413973
Chromosome Location	chr15:50179209-50179210
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12440932	1.00[AFR][1000 genomes]
rs12443320	1.00[AFR][1000 genomes]
rs4143620	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv833003	chr15:50100372-50273309	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50135200-50181400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr15:50135800-50187400	Weak transcription	Liver	Liver
3	chr15:50138200-50189800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chr15:50145600-50200400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr15:50149400-50198000	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr15:50161800-50210600	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr15:50163000-50200400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr15:50167600-50200800	Weak transcription	Spleen	Spleen
9	chr15:50171200-50179800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr15:50171200-50195200	Weak transcription	Placenta	Placenta
11	chr15:50172600-50180200	Weak transcription	Ovary	ovary
12	chr15:50174600-50179400	Weak transcription	Fetal Muscle Leg	muscle
13	chr15:50174600-50179600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr15:50174600-50187000	Weak transcription	Adipose Nuclei	Adipose
15	chr15:50177800-50179800	Weak transcription	Stomach Smooth Muscle	stomach
16	chr15:50178200-50180000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr15:50178600-50180200	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr15:50179000-50180600	Weak transcription	Primary hematopoietic stem cells	blood
19	chr15:50179200-50181800	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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