Variant report

Variant	rs2413998
Chromosome Location	chr15:50290295-50290296
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10851486	0.82[CHB][hapmap]
rs11854435	0.82[CHB][hapmap];1.00[CHD][hapmap]
rs13380264	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs28519657	1.00[EUR][1000 genomes]
rs2899447	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs4356419	0.81[ASW][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap]
rs7165755	0.82[CHB][hapmap];1.00[CHD][hapmap]
rs7170142	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.92[LWK][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7175148	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7180653	0.94[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8024393	1.00[CEU][hapmap]
rs8025172	0.82[CHB][hapmap]
rs935197	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1035983	chr15:50223334-50595170	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv542382	chr15:50223334-50595170	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv904207	chr15:50290295-50352945	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50268600-50290400	Strong transcription	Primary hematopoietic stem cells	blood
2	chr15:50278000-50301600	Weak transcription	Liver	Liver
3	chr15:50282000-50295600	Weak transcription	Adipose Nuclei	Adipose
4	chr15:50282200-50290400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr15:50283000-50290800	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr15:50283400-50290400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr15:50287400-50294400	Weak transcription	Fetal Stomach	stomach
8	chr15:50287600-50296000	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr15:50288400-50294000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr15:50288600-50293600	Weak transcription	Colon Smooth Muscle	Colon
11	chr15:50289600-50291800	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr15:50290000-50291800	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr15:50290200-50291600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr15:50290200-50291800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links