Variant report

Variant	rs2414147
Chromosome Location	chr15:52676712-52676713
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1669870	1.00[TSI][hapmap]
rs1669872	1.00[TSI][hapmap]
rs4774620	1.00[TSI][hapmap]
rs4776043	0.96[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1846455	chr15:52501831-52714452	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv471245	chr15:52607262-53187165	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv1041421	chr15:52661342-53148286	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv1054899	chr15:52662365-52803756	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52609800-52677600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:52630600-52684800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr15:52631600-52679200	Weak transcription	Fetal Intestine Small	intestine
4	chr15:52644200-52680800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr15:52644600-52730200	Weak transcription	Esophagus	oesophagus
6	chr15:52647400-52690600	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr15:52649000-52687200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr15:52649600-52677600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr15:52653600-52677400	Weak transcription	Colonic Mucosa	Colon
10	chr15:52658400-52687200	Weak transcription	Small Intestine	intestine
11	chr15:52659200-52676800	Strong transcription	Brain Inferior Temporal Lobe	brain
12	chr15:52659200-52677000	Strong transcription	Duodenum Smooth Muscle	Duodenum
13	chr15:52660400-52676800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr15:52662600-52683600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr15:52662600-52685000	Weak transcription	Psoas Muscle	Psoas
16	chr15:52663200-52711400	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr15:52663400-52708600	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr15:52665200-52720600	Weak transcription	Pancreas	Pancrea
19	chr15:52665600-52677200	Weak transcription	Fetal Intestine Large	intestine
20	chr15:52667000-52679600	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr15:52667000-52682000	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr15:52667000-52684800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr15:52667000-52686000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr15:52667000-52686600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr15:52667600-52676800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr15:52667600-52677000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr15:52667600-52684400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr15:52668000-52683400	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr15:52668800-52679400	Weak transcription	NH-A	brain
30	chr15:52668800-52683800	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr15:52668800-52730400	Weak transcription	Aorta	Aorta
32	chr15:52669200-52683400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr15:52669400-52693400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr15:52670800-52676800	Strong transcription	NHEK	skin
35	chr15:52671000-52676800	Strong transcription	Fetal Brain Female	brain
36	chr15:52671000-52677200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr15:52671200-52682000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr15:52671400-52681400	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr15:52671600-52677000	Strong transcription	Primary B cells from cord blood	blood
40	chr15:52672000-52679600	Weak transcription	Duodenum Mucosa	Duodenum
41	chr15:52672400-52684000	Weak transcription	Fetal Heart	heart
42	chr15:52673000-52677000	Strong transcription	HSMM	muscle
43	chr15:52673200-52676800	Strong transcription	Brain Cingulate Gyrus	brain
44	chr15:52673800-52683800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr15:52673800-52684800	Weak transcription	Hela-S3	cervix
46	chr15:52673800-52730200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr15:52674000-52677600	Weak transcription	Placenta	Placenta
48	chr15:52674000-52678000	Weak transcription	HSMMtube	muscle
49	chr15:52674000-52703800	Weak transcription	Fetal Brain Male	brain
50	chr15:52674800-52677000	Strong transcription	Primary T cells from cord blood	blood

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