Variant report

Variant	rs2414339
Chromosome Location	chr15:54941945-54941946
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1053864	1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs11631067	1.00[JPT][hapmap]
rs11631070	1.00[JPT][hapmap]
rs11856308	0.83[EUR][1000 genomes]
rs12101359	1.00[JPT][hapmap]
rs12101382	1.00[JPT][hapmap]
rs12101884	1.00[JPT][hapmap]
rs17237774	1.00[JPT][hapmap]
rs1961635	1.00[JPT][hapmap]
rs2303406	1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs2414334	0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2681963	0.89[JPT][hapmap]
rs28497739	0.83[EUR][1000 genomes]
rs28704091	0.83[EUR][1000 genomes]
rs6493693	1.00[JPT][hapmap]
rs7165350	1.00[JPT][hapmap]
rs7175154	1.00[JPT][hapmap]
rs7178466	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs73405757	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8035066	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8040685	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8042622	1.00[JPT][hapmap]
rs9920139	1.00[JPT][hapmap]
rs9920150	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1038660	chr15:54756184-55039913	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv569518	chr15:54898631-54954864	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv1043600	chr15:54910593-55010156	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
5	nsv1043237	chr15:54916301-55034633	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
6	nsv904238	chr15:54919539-54998764	Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
7	nsv1053983	chr15:54920850-54999183	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv833013	chr15:54927825-55135274	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54941400-54942200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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