Variant report

Variant	rs2414759
Chromosome Location	chr15:62366721-62366722
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:62364024..62367163-chr15:62377936..62381314,4	MCF-7	breast:
2	chr15:62361138..62363897-chr15:62365785..62367372,2	MCF-7	breast:

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs1030860	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1030861	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10468027	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs10519153	0.86[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10851704	0.83[YRI][hapmap]
rs10851705	0.81[CEU][hapmap];0.80[YRI][hapmap]
rs10851707	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11071634	0.81[CEU][hapmap];0.83[YRI][hapmap]
rs11071635	0.82[CEU][hapmap]
rs11071647	0.85[CEU][hapmap];0.90[YRI][hapmap]
rs11071648	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11071650	0.87[EUR][1000 genomes]
rs11629528	0.85[CEU][hapmap];0.90[YRI][hapmap];0.82[EUR][1000 genomes]
rs11630347	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11632441	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11634516	0.81[CEU][hapmap];0.86[YRI][hapmap]
rs11638793	0.82[CEU][hapmap];0.91[JPT][hapmap]
rs11639147	0.86[EUR][1000 genomes]
rs12439356	0.82[CEU][hapmap]
rs12439934	0.93[YRI][hapmap]
rs12442212	0.82[CEU][hapmap]
rs12442448	0.91[JPT][hapmap]
rs12442589	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12442675	0.85[CEU][hapmap]
rs12591155	0.83[CEU][hapmap];0.91[JPT][hapmap]
rs12592402	0.82[CEU][hapmap]
rs12592464	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12594658	0.83[CEU][hapmap]
rs12898209	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs12900703	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12901575	0.90[YRI][hapmap]
rs12902092	0.81[CEU][hapmap];0.90[YRI][hapmap]
rs12912208	0.90[YRI][hapmap]
rs12917535	0.81[AFR][1000 genomes]
rs1364810	0.86[CEU][hapmap];0.80[YRI][hapmap]
rs1370177	0.89[CEU][hapmap];0.86[YRI][hapmap]
rs1436959	0.91[JPT][hapmap];0.82[EUR][1000 genomes]
rs1436961	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1436965	0.90[YRI][hapmap]
rs1534542	0.96[CEU][hapmap];0.90[YRI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1561197	0.89[YRI][hapmap]
rs1836996	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2042608	0.90[YRI][hapmap]
rs2042610	0.86[CEU][hapmap];0.81[YRI][hapmap]
rs2113932	0.82[CEU][hapmap]
rs2113933	0.82[CEU][hapmap]
rs2162064	0.80[YRI][hapmap]
rs2414754	0.96[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes]
rs3743294	0.86[CEU][hapmap];0.81[YRI][hapmap]
rs3784445	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs3784633	0.81[CEU][hapmap]
rs3809517	0.84[CEU][hapmap]
rs4143841	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4372632	0.86[CEU][hapmap];0.87[EUR][1000 genomes]
rs4638519	0.90[YRI][hapmap]
rs4774425	0.82[CEU][hapmap]
rs4775447	0.81[CEU][hapmap]
rs4775455	0.83[CEU][hapmap]
rs6494299	0.82[CEU][hapmap];0.88[YRI][hapmap]
rs7161883	0.86[CEU][hapmap];0.90[YRI][hapmap];0.87[EUR][1000 genomes]
rs7164933	0.83[YRI][hapmap]
rs7168164	0.89[CEU][hapmap];0.86[YRI][hapmap]
rs7178424	0.82[CEU][hapmap]
rs7178540	0.82[CEU][hapmap]
rs7178945	0.80[CEU][hapmap]
rs7182842	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs731820	0.82[CEU][hapmap]
rs8038328	0.87[YRI][hapmap]
rs8039651	0.85[CEU][hapmap]
rs893156	0.80[CEU][hapmap]
rs893157	0.93[CEU][hapmap]
rs893158	0.80[CEU][hapmap]
rs933807	0.81[CEU][hapmap]
rs9635310	0.85[EUR][1000 genomes]
rs9788670	0.86[YRI][hapmap]
rs9920758	0.91[JPT][hapmap];0.82[EUR][1000 genomes]
rs9989353	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9989354	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457176	chr15:62178695-62519658	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv569643	chr15:62178695-62519658	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv471247	chr15:62202481-62519658	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv569646	chr15:62202482-62519658	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv1044748	chr15:62276183-62521856	Active TSS Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv542405	chr15:62276183-62521856	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
7	nsv457178	chr15:62340126-62394324	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
8	nsv569652	chr15:62340126-62394324	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
9	nsv1560	chr15:62354264-62399304	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
10	nsv948606	chr15:62364932-63088916	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:62361600-62367400	Weak transcription	Hela-S3	cervix

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