Variant report

Variant	rs2415208
Chromosome Location	chr15:73200168-73200169
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11072396	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12441946	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs1839270	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs2197894	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73199800-73200400	Enhancers	Fetal Intestine Small	intestine
2	chr15:73199800-73201400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr15:73200000-73200200	Bivalent Enhancer	HSMMtube	muscle
4	chr15:73200000-73200400	Enhancers	Brain Anterior Caudate	brain
5	chr15:73200000-73200400	Enhancers	Fetal Heart	heart
6	chr15:73200000-73200400	Enhancers	Fetal Intestine Large	intestine
7	chr15:73200000-73200400	Enhancers	Fetal Muscle Trunk	muscle
8	chr15:73200000-73200400	Enhancers	Fetal Muscle Leg	muscle
9	chr15:73200000-73200400	Enhancers	Ovary	ovary
10	chr15:73200000-73200400	Enhancers	Right Ventricle	heart
11	chr15:73200000-73200600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr15:73200000-73201200	Enhancers	Fetal Lung	lung
13	chr15:73200000-73201600	Enhancers	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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