Variant report

Variant	rs2415526
Chromosome Location	chr14:39525026-39525027
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4902326	0.86[EUR][1000 genomes]
rs4902344	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8014729	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429206	chr14:39160730-39648836	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv1038622	chr14:39423562-39604035	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv564417	chr14:39452317-39535560	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39517800-39525200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr14:39518800-39527000	Strong transcription	Skeletal Muscle Male	skeletal muscle
3	chr14:39519400-39525200	Strong transcription	Skeletal Muscle Female	skeletal muscle
4	chr14:39519600-39527000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
5	chr14:39519600-39529400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr14:39520000-39525200	Strong transcription	H1 Cell Line	embryonic stem cell
7	chr14:39520000-39525400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr14:39520200-39528000	Strong transcription	Muscle Satellite Cultured Cells	--
9	chr14:39520600-39525200	Strong transcription	Osteobl	bone
10	chr14:39520800-39525800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr14:39521200-39529800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr14:39521200-39535600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr14:39523000-39525600	ZNF genes & repeats	A549	lung
14	chr14:39523000-39527000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr14:39523000-39527000	Strong transcription	Placenta Amnion	Placenta Amnion
16	chr14:39523000-39527400	ZNF genes & repeats	Dnd41	blood
17	chr14:39523200-39527000	ZNF genes & repeats	Fetal Intestine Small	intestine
18	chr14:39523200-39527400	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
19	chr14:39523200-39529600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr14:39523400-39525200	Weak transcription	Small Intestine	intestine
21	chr14:39523400-39525200	Strong transcription	Hela-S3	cervix
22	chr14:39523400-39526600	ZNF genes & repeats	Brain Germinal Matrix	brain
23	chr14:39523400-39527400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
24	chr14:39523600-39527000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
25	chr14:39523600-39527000	ZNF genes & repeats	Lung	lung
26	chr14:39523600-39528000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
27	chr14:39523800-39527000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr14:39523800-39540200	Weak transcription	Psoas Muscle	Psoas
29	chr14:39524000-39528600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr14:39524000-39529200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
31	chr14:39524200-39525600	ZNF genes & repeats	Brain Substantia Nigra	brain
32	chr14:39524200-39526800	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr14:39524200-39526800	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr14:39524200-39526800	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
35	chr14:39524200-39526800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
36	chr14:39524200-39527000	ZNF genes & repeats	Primary B cells from cord blood	blood
37	chr14:39524200-39527000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
38	chr14:39524200-39527000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
39	chr14:39524200-39527400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr14:39524200-39527400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
41	chr14:39524200-39527400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
42	chr14:39524200-39527400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
43	chr14:39524200-39527400	ZNF genes & repeats	Fetal Brain Female	brain
44	chr14:39524200-39527400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
45	chr14:39524200-39529000	ZNF genes & repeats	GM12878-XiMat	blood
46	chr14:39524200-39529400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
47	chr14:39524200-39529600	ZNF genes & repeats	Primary T cells from cord blood	blood
48	chr14:39524400-39525600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr14:39524400-39526800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr14:39524400-39526800	ZNF genes & repeats	Fetal Thymus	thymus

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