Variant report

Variant	rs2417249
Chromosome Location	chr9:104053270-104053271
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7865487	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037157	chr9:104045761-104149233	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1049740	chr9:104049624-104075825	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104038200-104054000	Weak transcription	Fetal Brain Male	brain
2	chr9:104043400-104053400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr9:104046000-104056400	Weak transcription	Brain Anterior Caudate	brain
4	chr9:104046000-104061800	Weak transcription	Brain Substantia Nigra	brain
5	chr9:104048800-104071600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr9:104050800-104053600	Weak transcription	Brain Angular Gyrus	brain
7	chr9:104051400-104067800	Weak transcription	HepG2	liver
8	chr9:104051600-104054600	Weak transcription	Fetal Brain Female	brain
9	chr9:104052600-104054800	Weak transcription	Brain Hippocampus Middle	brain
10	chr9:104052800-104053400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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