Variant report

Variant	rs241726
Chromosome Location	chr22:33370736-33370737
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000241878	Chromatin interaction
ENSG00000100150	Chromatin interaction
ENSG00000254127	Chromatin interaction
ENSG00000100225	Chromatin interaction
ENSG00000128253	Chromatin interaction
ENSG00000242082	Chromatin interaction
ENSG00000185666	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs133940	0.84[ASW][hapmap];0.90[GIH][hapmap]
rs133968	0.84[ASW][hapmap];0.90[GIH][hapmap]
rs241724	1.00[YRI][hapmap]
rs241730	0.87[CHB][hapmap];0.88[CHD][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs241733	1.00[YRI][hapmap]
rs241891	1.00[YRI][hapmap]
rs241906	1.00[YRI][hapmap]
rs470012	0.90[GIH][hapmap]
rs5749537	0.94[CEU][hapmap];0.91[EUR][1000 genomes]
rs5754331	0.82[CEU][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes]
rs715621	0.82[ASW][hapmap];1.00[CEU][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531568	chr22:33336868-33480272	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv531587	chr22:33346710-33809338	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33314000-33380800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr22:33343200-33372600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr22:33348000-33382400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr22:33354000-33374000	Weak transcription	Brain Angular Gyrus	brain
5	chr22:33354400-33381800	Weak transcription	Fetal Brain Male	brain
6	chr22:33354600-33387400	Weak transcription	Fetal Brain Female	brain
7	chr22:33361000-33371400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr22:33361000-33380400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr22:33365400-33372000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr22:33365800-33373800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr22:33368800-33381800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr22:33369000-33372000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr22:33369000-33376800	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr22:33369200-33372000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr22:33370400-33373400	Strong transcription	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links