Variant report

Variant	rs241870
Chromosome Location	chr5:173910372-173910373
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:173909075..173912101-chr5:173913589..173916222,3	MCF-7	breast:
2	chr5:173887967..173889373-chr5:173910148..173911043,11	MCF-7	breast:
3	chr5:173910147..173911055-chr5:173918247..173919142,8	MCF-7	breast:
4	chr5:173910101..173911020-chr5:173918217..173919210,10	MCF-7	breast:
5	chr5:173908663..173910642-chr5:173956798..173959678,2	MCF-7	breast:
6	chr5:173888321..173888887-chr5:173910124..173911015,4	MCF-7	breast:
7	chr5:173909977..173911020-chr5:173918196..173919210,15	MCF-7	breast:
8	chr20:55837706..55838617-chr5:173910124..173911039,2	MCF-7	breast:
9	chr5:173887967..173889373-chr5:173910148..173911033,5	MCF-7	breast:
10	chr5:173910254..173911028-chr5:174441892..174442741,3	MCF-7	breast:
11	chr5:173910108..173911027-chr5:173950339..173951200,2	MCF-7	breast:
12	chr5:173906707..173909035-chr5:173909264..173911392,2	MCF-7	breast:
13	chr5:173907991..173910703-chr5:174166138..174167709,2	K562	blood:
14	chr5:173846285..173847280-chr5:173909796..173910959,3	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1827287	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2560338	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2560341	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2651295	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2651296	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs354959	0.86[EUR][1000 genomes]
rs354979	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs794741	0.97[EUR][1000 genomes]
rs9764154	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530479	chr5:173376776-174327398	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv917131	chr5:173543321-174059803	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1020486	chr5:173718254-174051668	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv537953	chr5:173718254-174051668	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:173907400-173910400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:173908400-173910400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:173909400-173910400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr5:173909400-173910400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr5:173909400-173910400	Enhancers	Fetal Intestine Small	intestine
6	chr5:173909400-173911000	Enhancers	Stomach Mucosa	stomach
7	chr5:173909600-173910400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr5:173909600-173910400	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr5:173909800-173910400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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