Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10885879	0.82[CEU][hapmap]
rs10885880	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1107030	0.82[CEU][hapmap]
rs11197587	0.82[CEU][hapmap]
rs12413585	0.82[CEU][hapmap];0.89[GIH][hapmap]
rs12570087	0.82[CEU][hapmap]
rs12773105	0.89[GIH][hapmap]
rs2245070	0.82[CEU][hapmap]
rs2245164	0.82[CEU][hapmap]
rs2420250	0.82[CEU][hapmap]
rs2420251	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577382	0.82[CEU][hapmap]
rs2694763	0.85[CEU][hapmap]
rs2694764	0.85[CEU][hapmap]
rs2694765	0.84[CEU][hapmap]
rs2694766	0.82[CEU][hapmap]
rs2694768	0.81[CEU][hapmap]
rs2694769	0.82[CEU][hapmap]
rs2694770	0.82[CEU][hapmap]
rs2901099	0.82[CEU][hapmap]
rs2901100	0.89[CEU][hapmap]
rs3858325	0.82[CEU][hapmap]
rs4562724	0.82[CEU][hapmap]
rs4751956	0.82[CEU][hapmap]
rs7894329	0.82[CEU][hapmap]
rs7911126	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832000	chr10:117944492-118116253	Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2420253	C10orf82	cis	parietal	SCAN
rs2420253	TRUB1	cis	parietal	SCAN
rs2420253	SLC25A35	trans	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117976800-117999800	Weak transcription	HSMM	muscle
2	chr10:117989600-117999600	Weak transcription	HSMMtube	muscle
3	chr10:117992600-117999800	Weak transcription	Fetal Lung	lung
4	chr10:117995000-117998200	Enhancers	Fetal Stomach	stomach
5	chr10:117995800-118007000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:117996800-117997200	Enhancers	Colon Smooth Muscle	Colon
7	chr10:117996800-117997200	Enhancers	Rectal Smooth Muscle	rectum
8	chr10:117996800-117997800	Enhancers	Fetal Muscle Leg	muscle
9	chr10:117996800-117999800	Enhancers	Liver	Liver
10	chr10:117997000-117997600	Enhancers	Duodenum Smooth Muscle	Duodenum

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