Variant report

Variant	rs2422414
Chromosome Location	chr2:76357545-76357546
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11886371	0.90[ASN][1000 genomes]
rs12472929	0.80[AFR][1000 genomes]
rs12478096	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12993689	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12994139	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12994329	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12994438	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12999290	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs13011354	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13013176	0.83[EUR][1000 genomes]
rs13020068	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13025684	0.81[EUR][1000 genomes]
rs2119424	0.81[EUR][1000 genomes]
rs317289	0.81[EUR][1000 genomes]
rs317292	0.82[EUR][1000 genomes]
rs317293	0.82[EUR][1000 genomes]
rs317294	0.82[EUR][1000 genomes]
rs34444448	0.92[AFR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34626009	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34801096	0.92[AFR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34927938	0.92[AFR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34943341	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34988525	0.81[EUR][1000 genomes]
rs35166262	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35191290	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35203643	0.92[AFR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35604495	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35721862	0.92[AFR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35840632	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs411150	0.81[EUR][1000 genomes]
rs443569	0.81[EUR][1000 genomes]
rs443713	0.81[EUR][1000 genomes]
rs4572619	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs59225353	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62165097	0.81[EUR][1000 genomes]
rs62165107	0.87[AFR][1000 genomes]
rs62166233	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62166234	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66469242	0.80[EUR][1000 genomes]
rs67017218	0.92[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6722749	0.82[EUR][1000 genomes]
rs6744439	0.81[EUR][1000 genomes]
rs6744983	0.82[EUR][1000 genomes]
rs67509175	0.82[EUR][1000 genomes]
rs67699033	0.82[EUR][1000 genomes]
rs71391729	0.92[AFR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs730148	0.92[AFR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs730149	0.92[AFR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7582596	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7585603	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834265	chr2:76275611-76450728	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv999645	chr2:76317006-76451354	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76356200-76358000	Enhancers	HepG2	liver
2	chr2:76356400-76358000	Enhancers	Fetal Intestine Large	intestine
3	chr2:76356400-76358200	Enhancers	Fetal Intestine Small	intestine
4	chr2:76357400-76357800	Enhancers	Pancreas	Pancrea
5	chr2:76357400-76358000	Enhancers	Duodenum Mucosa	Duodenum
6	chr2:76357400-76358000	Enhancers	Rectal Mucosa Donor 31	rectum

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