Variant report

Variant	rs242263
Chromosome Location	chr6:88018313-88018314
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 15 )

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs1145712	1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs1145713	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1145714	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1145715	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1145716	1.00[ASN][1000 genomes]
rs11759727	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1188806	1.00[ASN][1000 genomes]
rs1188816	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1188817	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1188818	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1188819	0.84[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1203162	1.00[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1203163	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1203164	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12194354	0.94[ASN][1000 genomes]
rs12211627	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13201289	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1630494	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1739886	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1746444	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1753152	0.98[ASN][1000 genomes]
rs1753159	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs181491	0.99[ASN][1000 genomes]
rs2236048	0.99[ASN][1000 genomes]
rs2257153	0.95[ASN][1000 genomes]
rs242264	0.81[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs242265	0.85[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs242266	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs242268	0.85[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs242269	0.85[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs242274	0.89[ASN][1000 genomes]
rs242275	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs242276	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs242277	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs242282	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2983136	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs368267	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs374792	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs377288	0.81[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs379455	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs381741	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs381798	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs382956	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs383692	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs384318	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs385210	0.89[ASN][1000 genomes]
rs3857486	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs392807	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs397516	0.86[CHB][hapmap];0.90[CHD][hapmap];0.81[ASN][1000 genomes]
rs398140	0.85[CEU][hapmap];0.87[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];0.90[JPT][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3999791	0.81[ASN][1000 genomes]
rs406981	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs410683	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap]
rs411606	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs413687	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs414453	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs440296	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs452315	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4707345	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs4707355	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs490447	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs540975	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs541170	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6908834	0.91[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.88[ASN][1000 genomes]
rs6913159	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs6921673	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6926686	0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6932641	0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6938885	0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6939075	0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6940325	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs7752414	0.91[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap]
rs7758360	0.81[EUR][1000 genomes]
rs827433	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs910564	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs910565	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9294376	0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9444486	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9444488	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9444490	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9444491	0.91[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9450630	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9450636	0.91[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.81[ASN][1000 genomes]
rs9450637	0.82[ASN][1000 genomes]
rs9450638	0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9450639	0.82[ASN][1000 genomes]
rs9450640	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9450646	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9450651	0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9450653	0.91[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9450659	0.81[GIH][hapmap]

mRNA abundance (count:15)

SNP	Gene	Cis/trans	Tissue	Source
rs242263	C6orf162	cis	multi-tissue	Pritchard
rs242263	SLC35A1	cis	parietal	SCAN
rs242263	C6orf162	cis	parietal	SCAN
rs242263	ZNF292	cis	Lymphoblastoid	GTEx
rs242263	Hs.485895	cis	multi-tissue	Pritchard
rs242263	C6orf162	cis	Lymphoblastoid	GTEx
rs242263	MDN1	cis	parietal	SCAN
rs242263	C6orf164	cis	Artery Aorta	GTEx
rs242263	C6orf164	cis	Nerve Tibial	GTEx
rs242263	C6orf162	cis	cerebellum	SCAN
rs242263	C6orf164	cis	Skin Sun Exposed Lower leg	GTEx
rs242263	C6orf164	cis	Artery Tibial	GTEx
rs242263	C6orf162	cis	normal skin	skin_eQTL
rs242263	C6orf163	cis	parietal	SCAN
rs242263	C6orf162	cis	lymphoblastoid	seeQTL

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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