Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12436214	1.00[YRI][hapmap]
rs12882094	0.84[YRI][hapmap]
rs12888678	0.88[YRI][hapmap]
rs1552016	0.81[YRI][hapmap]
rs17091123	0.86[TSI][hapmap]
rs2281826	1.00[YRI][hapmap]
rs242390	0.95[CHB][hapmap];0.86[JPT][hapmap];0.96[ASN][1000 genomes]
rs242392	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs242394	0.95[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs242400	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3825618	0.81[YRI][hapmap]
rs3895330	0.83[ASW][hapmap];0.84[LWK][hapmap];0.91[YRI][hapmap]
rs4898885	0.95[YRI][hapmap]
rs4901649	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4901667	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs7140575	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs7142227	0.83[ASW][hapmap]
rs7143560	0.84[TSI][hapmap]
rs7152487	0.84[TSI][hapmap]
rs8014574	0.84[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533129	chr14:56568535-56819234	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv1844788	chr14:56594420-56771207	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56615600-56639800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:56616800-56640200	Weak transcription	Fetal Stomach	stomach
3	chr14:56618000-56629200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr14:56621400-56637600	Weak transcription	Small Intestine	intestine
5	chr14:56624600-56629600	Enhancers	Dnd41	blood
6	chr14:56625800-56628000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr14:56625800-56628200	Enhancers	Fetal Thymus	thymus
8	chr14:56626000-56628000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr14:56626000-56628000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr14:56626800-56628000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr14:56627000-56629200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr14:56627200-56629200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr14:56627200-56633400	Weak transcription	Thymus	Thymus
14	chr14:56627200-56634400	Weak transcription	Pancreas	Pancrea
15	chr14:56627200-56645000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr14:56627400-56634400	Weak transcription	Stomach Mucosa	stomach

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