Variant report

Variant	rs2424589
Chromosome Location	chr20:23635700-23635701
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:23624045..23625707-chr20:23633322..23636030,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2424592	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491876	chr20:23436633-24031374	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23622200-23636600	Weak transcription	Pancreas	Pancrea
2	chr20:23622800-23640000	Weak transcription	Stomach Mucosa	stomach
3	chr20:23623200-23636200	Weak transcription	Lung	lung
4	chr20:23628200-23638000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr20:23633000-23636400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr20:23633000-23636600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr20:23633000-23637200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr20:23633000-23639400	Enhancers	HepG2	liver
9	chr20:23633200-23636200	Enhancers	Brain Substantia Nigra	brain
10	chr20:23633400-23636000	Enhancers	Adipose Nuclei	Adipose
11	chr20:23633600-23635800	Enhancers	Colon Smooth Muscle	Colon
12	chr20:23633800-23636000	Enhancers	Brain Anterior Caudate	brain
13	chr20:23633800-23636400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr20:23634000-23635800	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr20:23634000-23636200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr20:23634000-23636200	Enhancers	Brain Germinal Matrix	brain
17	chr20:23634000-23637400	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr20:23634200-23635800	Enhancers	Duodenum Mucosa	Duodenum
19	chr20:23634200-23636200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr20:23634200-23636200	Enhancers	Stomach Smooth Muscle	stomach
21	chr20:23634200-23636400	Enhancers	Fetal Muscle Trunk	muscle
22	chr20:23634200-23637200	Enhancers	Fetal Muscle Leg	muscle
23	chr20:23634200-23637600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
24	chr20:23634400-23636400	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr20:23634600-23635800	Enhancers	Brain Angular Gyrus	brain
26	chr20:23634600-23636800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr20:23634800-23635800	Bivalent Enhancer	Brain Cingulate Gyrus	brain
28	chr20:23634800-23636200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
29	chr20:23634800-23636400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr20:23634800-23636400	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr20:23634800-23636600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
32	chr20:23634800-23638400	Weak transcription	Fetal Intestine Small	intestine
33	chr20:23635000-23635800	Enhancers	Liver	Liver
34	chr20:23635000-23636200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr20:23635000-23636200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr20:23635000-23636200	Enhancers	Fetal Stomach	stomach
37	chr20:23635000-23636400	Enhancers	Primary hematopoietic stem cells	blood
38	chr20:23635000-23636400	Weak transcription	Esophagus	oesophagus
39	chr20:23635000-23636400	Weak transcription	Left Ventricle	heart
40	chr20:23635000-23637000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr20:23635000-23637800	Weak transcription	Fetal Intestine Large	intestine
42	chr20:23635200-23636200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr20:23635200-23636200	Weak transcription	Right Atrium	heart
44	chr20:23635200-23636600	Weak transcription	Psoas Muscle	Psoas
45	chr20:23635200-23636800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr20:23635200-23637200	Enhancers	Primary B cells from cord blood	blood
47	chr20:23635400-23635800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr20:23635400-23636200	Weak transcription	Rectal Smooth Muscle	rectum
49	chr20:23635400-23636400	Weak transcription	Right Ventricle	heart
50	chr20:23635400-23636400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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