Variant report

Variant	rs2424608
Chromosome Location	chr20:23969285-23969286
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZBTB33	chr20:23969001-23969450	K562	blood:	n/a	chr20:23969411-23969420
2	ZBTB33	chr20:23968968-23969338	K562	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr20:23969237-23969287	GM12878	blood:	n/a
2	chr20:23969237-23969287	Jurkat	blood:	n/a
3	chr20:23969237-23969287	GM06990	blood:	n/a
4	chr20:23969237-23969287	HepG2	liver:	n/a
5	chr20:23969237-23969287	NT2-D1	testis:	n/a
6	chr20:23969237-23969287	SK-N-SH	brain:	n/a
7	chr20:23969237-23969287	HCT-116	colon:	n/a
8	chr20:23969237-23969287	NHDF-neo	bronchial:	n/a
9	chr20:23969237-23969287	SAEC	small airway:	n/a
10	chr20:23969237-23969287	LNCaP	prostate:	n/a
11	chr20:23969237-23969287	CMK	blood:	n/a
12	chr20:23969237-23969287	IMR90	lung:	fetal
13	chr20:23969237-23969287	AG04449	skin:	fetal
14	chr20:23969237-23969287	U87	brain:	n/a
15	chr20:23969237-23969287	K562	blood:	n/a
16	chr20:23969237-23969287	HRE	kidney:	n/a
17	chr20:23969237-23969287	HRPEpiC	eye:	n/a
18	chr20:23969237-23969287	HEEpiC	esophagus:	n/a
19	chr20:23969237-23969287	HCPEpiC	choroid plexus:	n/a
20	chr20:23969237-23969287	HCF	heart:	n/a
21	chr20:23969237-23969287	SK-N-MC	brain:	n/a
22	chr20:23969237-23969287	RPTEC	kidney:	n/a
23	chr20:23969237-23969287	AG09309	skin:	n/a
24	chr20:23969237-23969287	NH-A	brain:	n/a
25	chr20:23969237-23969287	ProgFib	skin:	n/a
26	chr20:23969237-23969287	GM12892	blood:	n/a
27	chr20:23969237-23969287	SKMC	muscle:	n/a
28	chr20:23969237-23969287	HEK293	kidney:	embryo
29	chr20:23969237-23969287	HPAEpiC	pulmonary alveolar:	n/a
30	chr20:23969237-23969287	BJ	skin:	n/a
31	chr20:23969237-23969287	MCF-7	breast:	n/a
32	chr20:23969237-23969287	HNPCEpiC	eye:	n/a
33	chr20:23969237-23969287	NB4	blood:	n/a
34	chr20:23969237-23969287	Hepatocyte	liver:	n/a
35	chr20:23969237-23969287	HRCEpiC	kidney:	n/a
36	chr20:23969237-23969287	GM19239	blood:	n/a
37	chr20:23969237-23969287	HUVEC	blood vessel:	n/a
38	chr20:23969237-23969287	Hela-S3	cervix:	n/a
39	chr20:23969237-23969287	HIPEpiC	eye:	n/a
40	chr20:23969237-23969287	ECC-1	luminal epithelium:	n/a
41	chr20:23969237-23969287	NHBE	bronchial:	n/a
42	chr20:23969237-23969287	PANC-1	pancreas:	n/a
43	chr20:23969237-23969287	ovcar-3	ovarian:	n/a
44	chr20:23969237-23969287	AG09319	gingival:	n/a
45	chr20:23969237-23969287	GM12891	blood:	n/a
46	chr20:23969237-23969287	PrEC	prostate:	n/a
47	chr20:23969237-23969287	T-47D	breast:	n/a
48	chr20:23969237-23969287	AoSMC	blood vessel:	n/a
49	chr20:23969237-23969287	PFSK-1	brain:	n/a
50	chr20:23969237-23969287	Caco-2	colon:	n/a

No data

Variant related genes	Relation type
GGTLC1	TF binding region
POM121L3P	TF binding region
GGTLC1	CpG island
POM121L3P	CpG island

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9798580	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491876	chr20:23436633-24031374	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv833944	chr20:23806288-24021865	Bivalent Enhancer Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1063474	chr20:23918394-24048069	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv1056491	chr20:23955040-24105080	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv15775	chr20:23955662-23977093	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv820636	chr20:23956042-23976910	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	esv18738	chr20:23956042-23994680	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	esv1806279	chr20:23956609-23980100	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv962565	chr20:23956974-23976574	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv979449	chr20:23967112-23971365	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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