Variant report

Variant	rs2427981
Chromosome Location	chr9:136581419-136581420
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:136397639..136398833-chr9:136580643..136581791,10	MCF-7	breast:
2	chr9:136397924..136398838-chr9:136580700..136581803,6	MCF-7	breast:
3	chr9:136575619..136578440-chr9:136578792..136581710,2	K562	blood:
4	chr9:136573704..136576391-chr9:136578401..136581568,3	MCF-7	breast:
5	chr9:136454458..136455161-chr9:136580969..136581838,2	MCF-7	breast:
6	chr9:136556867..136559389-chr9:136579580..136582803,3	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2027963	0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];0.99[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap]
rs2073815	0.87[GIH][hapmap]
rs2510240	0.91[EUR][1000 genomes]
rs9409848	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894081	chr9:136227260-136678954	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv894086	chr9:136281753-136657960	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
3	nsv530972	chr9:136324358-136643044	Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
4	nsv870051	chr9:136459745-136656889	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv894108	chr9:136507473-136617292	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1049434	chr9:136529766-136618314	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv1793889	chr9:136533509-136581419	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1049281	chr9:136535471-136617805	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv894113	chr9:136538798-136586367	Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv894114	chr9:136538798-136779153	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
11	nsv428546	chr9:136541745-136720872	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv469907	chr9:136552263-136600201	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv894115	chr9:136571089-136617292	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	nsv519503	chr9:136572021-136581419	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	nsv894116	chr9:136572021-136608669	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
16	nsv466621	chr9:136573412-136600201	Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
17	nsv615690	chr9:136573412-136600201	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:136571800-136582600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
2	chr9:136576000-136582000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr9:136576000-136582200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
4	chr9:136577800-136582600	Enhancers	Fetal Muscle Leg	muscle
5	chr9:136578200-136582200	Flanking Active TSS	HepG2	liver
6	chr9:136578400-136581600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr9:136578600-136581600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr9:136578600-136582200	Enhancers	NHDF-Ad	bronchial
9	chr9:136578600-136582400	Enhancers	Fetal Intestine Large	intestine
10	chr9:136578600-136584200	Genic enhancers	Liver	Liver
11	chr9:136578800-136581800	Bivalent Enhancer	Placenta	Placenta
12	chr9:136579200-136582000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr9:136579200-136591800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr9:136579400-136582000	Enhancers	Ovary	ovary
15	chr9:136579400-136582000	Enhancers	NHLF	lung
16	chr9:136579800-136582400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr9:136580000-136581600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr9:136580000-136581600	Enhancers	Placenta Amnion	Placenta Amnion
19	chr9:136580000-136581600	Enhancers	Right Atrium	heart
20	chr9:136580000-136582000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr9:136580200-136581600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr9:136580200-136581800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr9:136580200-136581800	Bivalent Enhancer	Adipose Nuclei	Adipose
24	chr9:136580400-136581600	Bivalent Enhancer	Duodenum Mucosa	Duodenum
25	chr9:136580400-136581600	Enhancers	Fetal Stomach	stomach
26	chr9:136580400-136582400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
27	chr9:136580600-136581600	Enhancers	NH-A	brain
28	chr9:136580600-136592400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr9:136580800-136581600	Enhancers	Right Ventricle	heart
30	chr9:136580800-136581800	Enhancers	Colonic Mucosa	Colon
31	chr9:136580800-136582000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr9:136580800-136582800	Strong transcription	Pancreas	Pancrea
33	chr9:136581000-136581800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
34	chr9:136581000-136582000	Enhancers	Fetal Intestine Small	intestine
35	chr9:136581000-136582200	Enhancers	Duodenum Smooth Muscle	Duodenum
36	chr9:136581000-136582400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
37	chr9:136581000-136582800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr9:136581200-136581800	Enhancers	Osteobl	bone
39	chr9:136581200-136582000	Enhancers	Muscle Satellite Cultured Cells	--
40	chr9:136581400-136581600	Enhancers	Brain Hippocampus Middle	brain
41	chr9:136581400-136581600	Enhancers	HSMMtube	muscle
42	chr9:136581400-136582200	Enhancers	HSMM	muscle
43	chr9:136581400-136602600	Weak transcription	Fetal Lung	lung

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