Variant report

Variant	rs2429067
Chromosome Location	chr7:101370652-101370653
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:101360472..101364691-chr7:101369638..101374194,4	K562	blood:
2	chr7:101369491..101371079-chr7:101371516..101374342,2	MCF-7	breast:
3	chr7:101365806..101367484-chr7:101370262..101372822,3	K562	blood:
4	chr7:101369389..101371696-chr7:101459949..101461820,2	MCF-7	breast:
5	chr7:101370298..101373054-chr7:101584171..101586451,2	MCF-7	breast:
6	chr7:101369100..101373067-chr7:101374919..101378261,3	K562	blood:
7	chr7:101363569..101367486-chr7:101367567..101371455,4	MCF-7	breast:
8	chr7:101364262..101367929-chr7:101368962..101372975,5	MCF-7	breast:
9	chr7:101370197..101372685-chr7:101384392..101387047,2	K562	blood:
10	chr7:101366199..101374490-chr7:101455423..101462621,17	MCF-7	breast:
11	chr7:101359739..101361409-chr7:101369275..101370886,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1965519	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2250433	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2529238	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2529240	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2529241	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2690950	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv1018544	chr7:101225639-101424889	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv539045	chr7:101225639-101424889	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv482758	chr7:101231458-101395219	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv831079	chr7:101273495-101466776	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
6	nsv1021797	chr7:101342353-101466957	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
7	nsv539046	chr7:101342353-101466957	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
8	nsv1024319	chr7:101368299-101668159	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
9	nsv539047	chr7:101368299-101668159	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101332000-101376800	Weak transcription	Right Atrium	heart
2	chr7:101364800-101382400	Weak transcription	Thymus	Thymus
3	chr7:101365600-101371200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr7:101366000-101371400	Weak transcription	Colonic Mucosa	Colon
5	chr7:101367800-101371000	Weak transcription	Fetal Intestine Small	intestine
6	chr7:101369000-101373400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr7:101369000-101373600	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr7:101369200-101371200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr7:101369400-101371400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr7:101369600-101372400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr7:101369600-101377400	Weak transcription	Spleen	Spleen
12	chr7:101370000-101374200	Enhancers	Fetal Intestine Large	intestine
13	chr7:101370200-101371400	Enhancers	Hela-S3	cervix
14	chr7:101370400-101371600	Weak transcription	Stomach Mucosa	stomach
15	chr7:101370400-101372200	Weak transcription	Placenta	Placenta
16	chr7:101370400-101374800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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