Variant report

Variant	rs2430412
Chromosome Location	chr1:223361416-223361417
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1640801	0.92[AFR][1000 genomes]
rs1773751	0.88[AFR][1000 genomes]
rs1773752	0.88[AFR][1000 genomes]
rs1773764	0.88[AFR][1000 genomes]
rs851167	1.00[AFR][1000 genomes]
rs851169	1.00[AFR][1000 genomes]
rs851172	1.00[AFR][1000 genomes]
rs851175	0.92[AFR][1000 genomes]
rs864833	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv832659	chr1:223294767-223438487	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223349800-223375400	Weak transcription	Right Atrium	heart
2	chr1:223353000-223362000	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr1:223356600-223362000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr1:223357200-223362000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr1:223357600-223361600	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr1:223357800-223361600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr1:223358400-223361800	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr1:223358800-223362000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr1:223361000-223364000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr1:223361400-223363800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr1:223361400-223365400	Enhancers	Primary T cells from cord blood	blood
12	chr1:223361400-223365400	Enhancers	Primary T helper cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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