Variant report

Variant	rs2430763
Chromosome Location	chr17:67354696-67354697
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1154017	0.87[AFR][1000 genomes]
rs1222599	0.87[AFR][1000 genomes]
rs1662694	0.97[ASN][1000 genomes]
rs182834	0.97[ASN][1000 genomes]
rs2441360	0.86[AFR][1000 genomes]
rs333911	0.97[ASN][1000 genomes]
rs333912	0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs333913	0.97[ASN][1000 genomes]
rs333914	0.97[ASN][1000 genomes]
rs333915	0.97[ASN][1000 genomes]
rs333916	0.97[ASN][1000 genomes]
rs333917	0.97[ASN][1000 genomes]
rs333918	0.97[ASN][1000 genomes]
rs333919	0.95[ASN][1000 genomes]
rs474246	0.86[ASN][1000 genomes]
rs475278	0.86[ASN][1000 genomes]
rs489695	0.97[ASN][1000 genomes]
rs491516	0.96[ASN][1000 genomes]
rs497012	0.88[ASN][1000 genomes]
rs536108	0.83[ASN][1000 genomes]
rs550879	0.86[ASN][1000 genomes]
rs569063	0.97[ASN][1000 genomes]
rs575988	0.92[ASN][1000 genomes]
rs817103	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833527	chr17:67240575-67400871	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv522420	chr17:67345358-67357573	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67339400-67355200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr17:67352400-67358200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr17:67353600-67355400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr17:67354000-67355400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr17:67354000-67355400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr17:67354000-67360000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr17:67354200-67355200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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